Analysis of interatomic Contacts of Structural Units in PDB entry:
8UYA

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8UYA entry

There are 2 chains in PDB entry 8UYA (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	GLN 898
B	MET 1	GLN 898

There are 76 helices in PDB entry 8UYA. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	3	8	Right-handed 310
Helix 2	AA2	A	35	46	Right-handed alpha
Helix 3	AA3	A	49	57	Right-handed alpha
Helix 4	AA4	A	67	77	Right-handed alpha
Helix 5	AA5	A	81	85	Right-handed 310
Helix 6	AA6	A	88	96	Right-handed alpha
Helix 7	AA7	A	99	113	Right-handed alpha
Helix 8	AA8	A	117	147	Right-handed alpha
Helix 9	AA9	A	258	262	Right-handed 310
Helix 10	AB1	A	280	311	Right-handed alpha
Helix 11	AB2	A	313	326	Right-handed alpha
Helix 12	AB3	A	327	331	Right-handed 310
Helix 13	AB4	A	332	350	Right-handed alpha
Helix 14	AB5	A	359	365	Right-handed alpha
Helix 15	AB6	A	398	405	Right-handed alpha
Helix 16	AB7	A	417	425	Right-handed alpha
Helix 17	AB8	A	426	437	Right-handed alpha
Helix 18	AB9	A	471	476	Right-handed alpha
Helix 19	AC1	A	492	506	Right-handed alpha
Helix 20	AC2	A	528	532	Right-handed 310
Helix 21	AC3	A	551	562	Right-handed alpha
Helix 22	AC4	A	577	583	Right-handed alpha
Helix 23	AC5	A	593	597	Right-handed alpha
Helix 24	AC6	A	600	608	Right-handed alpha
Helix 25	AC7	A	618	629	Right-handed alpha
Helix 26	AC8	A	645	652	Right-handed alpha
Helix 27	AC9	A	662	668	Right-handed alpha
Helix 28	AD1	A	678	717	Right-handed alpha
Helix 29	AD2	A	726	741	Right-handed alpha
Helix 30	AD3	A	742	747	Right-handed 310
Helix 31	AD4	A	761	763	Right-handed 310
Helix 32	AD5	A	764	772	Right-handed alpha
Helix 33	AD6	A	773	790	Right-handed alpha
Helix 34	AD7	A	799	817	Right-handed alpha
Helix 35	AD8	A	834	851	Right-handed alpha
Helix 36	AD9	A	854	858	Right-handed 310
Helix 37	AE1	A	868	893	Right-handed alpha
Helix 38	AE2	B	14	19	Right-handed alpha
Helix 39	AE3	B	35	46	Right-handed alpha
Helix 40	AE4	B	51	57	Right-handed alpha
Helix 41	AE5	B	67	77	Right-handed alpha
Helix 42	AE6	B	81	85	Right-handed 310
Helix 43	AE7	B	88	96	Right-handed alpha
Helix 44	AE8	B	99	113	Right-handed alpha
Helix 45	AE9	B	117	147	Right-handed alpha
Helix 46	AF1	B	258	262	Right-handed 310
Helix 47	AF2	B	280	311	Right-handed alpha
Helix 48	AF3	B	313	326	Right-handed alpha
Helix 49	AF4	B	327	331	Right-handed 310
Helix 50	AF5	B	332	350	Right-handed alpha
Helix 51	AF6	B	359	365	Right-handed alpha
Helix 52	AF7	B	398	409	Right-handed alpha
Helix 53	AF8	B	415	424	Right-handed alpha
Helix 54	AF9	B	426	437	Right-handed alpha
Helix 55	AG1	B	471	476	Right-handed alpha
Helix 56	AG2	B	492	506	Right-handed alpha
Helix 57	AG3	B	528	532	Right-handed 310
Helix 58	AG4	B	551	562	Right-handed alpha
Helix 59	AG5	B	577	583	Right-handed alpha
Helix 60	AG6	B	595	599	Right-handed 310
Helix 61	AG7	B	600	608	Right-handed alpha
Helix 62	AG8	B	618	628	Right-handed alpha
Helix 63	AG9	B	645	652	Right-handed alpha
Helix 64	AH1	B	662	668	Right-handed alpha
Helix 65	AH2	B	679	717	Right-handed alpha
Helix 66	AH3	B	726	742	Right-handed alpha
Helix 67	AH4	B	743	747	Right-handed 310
Helix 68	AH5	B	761	763	Right-handed 310
Helix 69	AH6	B	764	772	Right-handed alpha
Helix 70	AH7	B	773	775	Right-handed 310
Helix 71	AH8	B	776	791	Right-handed alpha
Helix 72	AH9	B	799	817	Right-handed alpha
Helix 73	AI1	B	834	851	Right-handed alpha
Helix 74	AI2	B	854	858	Right-handed 310
Helix 75	AI3	B	869	888	Right-handed alpha
Helix 76	AI4	B	888	893	Right-handed alpha

There are 15 sheets in PDB entry 8UYA. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	156	158	first strand
Strand 2	A	173	175	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	184	187	first strand
Strand 2	A	251	254	anti-parallel
Strand 3	A	197	202	anti-parallel
Strand 4	A	239	240	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	219	221	first strand
Strand 2	A	205	207	anti-parallel
Strand 3	A	246	248	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	591	592	first strand
Strand 2	A	613	615	parallel
Strand 3	A	564	568	parallel
Strand 4	A	369	372	parallel
Strand 5	A	636	638	parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	385	387	first strand
Strand 2	A	536	544	anti-parallel
Strand 3	A	510	517	anti-parallel
Strand 4	A	467	470	anti-parallel
Strand 5	A	451	457	anti-parallel
Strand 6	A	438	443	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	385	387	first strand
Strand 2	A	536	544	anti-parallel
Strand 3	A	480	483	parallel
Strand 4	A	486	489	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	462	464	first strand
Strand 2	A	519	521	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	657	658	first strand
Strand 2	A	672	673	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	156	159	first strand
Strand 2	B	172	175	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	184	187	first strand
Strand 2	B	245	254	anti-parallel
Strand 3	B	197	208	anti-parallel
Strand 4	B	219	221	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	184	187	first strand
Strand 2	B	245	254	anti-parallel
Strand 3	B	197	208	anti-parallel
Strand 4	B	239	240	anti-parallel

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There are 7 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	591	592	first strand
Strand 2	B	613	615	parallel
Strand 3	B	564	568	parallel
Strand 4	B	369	372	parallel
Strand 5	B	636	639	parallel
Strand 6	B	654	658	parallel
Strand 7	B	671	673	parallel

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There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	385	387	first strand
Strand 2	B	536	544	anti-parallel
Strand 3	B	511	517	anti-parallel
Strand 4	B	467	470	anti-parallel
Strand 5	B	451	457	anti-parallel
Strand 6	B	438	443	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	385	387	first strand
Strand 2	B	536	544	anti-parallel
Strand 3	B	480	483	parallel
Strand 4	B	486	489	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	462	464	first strand
Strand 2	B	519	521	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8UYA

Analysis of interatomic Contacts of Structural Units in PDB entry:
8UYA