Analysis of interatomic Contacts of Structural Units in PDB entry:
8UYB


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8UYB entry

There are 2 chains in PDB entry 8UYB (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1GLN 898
B
 MET 1GLN 898
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 82 helices in PDB entry 8UYB. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
37 48Right-handed alpha
Helix 2
AA2
A
49 57Right-handed alpha
Helix 3
AA3
A
65 77Right-handed alpha
Helix 4
AA4
A
81 85Right-handed 310
Helix 5
AA5
A
88 96Right-handed alpha
Helix 6
AA6
A
99 113Right-handed alpha
Helix 7
AA7
A
120 153Right-handed alpha
Helix 8
AA8
A
177 179Right-handed 310
Helix 9
AA9
A
258 261Right-handed 310
Helix 10
AB1
A
262 267Right-handed alpha
Helix 11
AB2
A
279 312Right-handed alpha
Helix 12
AB3
A
313 326Right-handed alpha
Helix 13
AB4
A
327 330Right-handed 310
Helix 14
AB5
A
331 351Right-handed alpha
Helix 15
AB6
A
359 366Right-handed alpha
Helix 16
AB7
A
373 378Right-handed alpha
Helix 17
AB8
A
396 409Right-handed alpha
Helix 18
AB9
A
415 425Right-handed alpha
Helix 19
AC1
A
426 437Right-handed alpha
Helix 20
AC2
A
471 476Right-handed alpha
Helix 21
AC3
A
483 486Right-handed 310
Helix 22
AC4
A
491 508Right-handed alpha
Helix 23
AC5
A
528 532Right-handed 310
Helix 24
AC6
A
550 562Right-handed alpha
Helix 25
AC7
A
572 583Right-handed alpha
Helix 26
AC8
A
593 597Right-handed alpha
Helix 27
AC9
A
600 610Right-handed alpha
Helix 28
AD1
A
618 630Right-handed alpha
Helix 29
AD2
A
644 652Right-handed alpha
Helix 30
AD3
A
662 669Right-handed alpha
Helix 31
AD4
A
677 715Right-handed alpha
Helix 32
AD5
A
726 742Right-handed alpha
Helix 33
AD6
A
743 747Right-handed 310
Helix 34
AD7
A
762 773Right-handed alpha
Helix 35
AD8
A
773 790Right-handed alpha
Helix 36
AD9
A
795 797Right-handed 310
Helix 37
AE1
A
798 817Right-handed alpha
Helix 38
AE2
A
818 821Right-handed 310
Helix 39
AE3
A
834 851Right-handed alpha
Helix 40
AE4
A
855 860Right-handed alpha
Helix 41
AE5
A
868 895Right-handed alpha
Helix 42
AE6
B
37 48Right-handed alpha
Helix 43
AE7
B
49 57Right-handed alpha
Helix 44
AE8
B
65 77Right-handed alpha
Helix 45
AE9
B
81 85Right-handed 310
Helix 46
AF1
B
88 96Right-handed alpha
Helix 47
AF2
B
99 113Right-handed alpha
Helix 48
AF3
B
121 153Right-handed alpha
Helix 49
AF4
B
177 179Right-handed 310
Helix 50
AF5
B
258 261Right-handed 310
Helix 51
AF6
B
262 267Right-handed alpha
Helix 52
AF7
B
279 312Right-handed alpha
Helix 53
AF8
B
313 326Right-handed alpha
Helix 54
AF9
B
327 330Right-handed 310
Helix 55
AG1
B
331 351Right-handed alpha
Helix 56
AG2
B
359 366Right-handed alpha
Helix 57
AG3
B
373 378Right-handed alpha
Helix 58
AG4
B
396 409Right-handed alpha
Helix 59
AG5
B
415 425Right-handed alpha
Helix 60
AG6
B
426 437Right-handed alpha
Helix 61
AG7
B
470 476Right-handed alpha
Helix 62
AG8
B
483 486Right-handed 310
Helix 63
AG9
B
491 508Right-handed alpha
Helix 64
AH1
B
528 532Right-handed 310
Helix 65
AH2
B
550 562Right-handed alpha
Helix 66
AH3
B
572 584Right-handed alpha
Helix 67
AH4
B
593 597Right-handed alpha
Helix 68
AH5
B
600 610Right-handed alpha
Helix 69
AH6
B
618 630Right-handed alpha
Helix 70
AH7
B
645 652Right-handed alpha
Helix 71
AH8
B
662 669Right-handed alpha
Helix 72
AH9
B
677 715Right-handed alpha
Helix 73
AI1
B
726 742Right-handed alpha
Helix 74
AI2
B
743 747Right-handed 310
Helix 75
AI3
B
762 773Right-handed alpha
Helix 76
AI4
B
773 790Right-handed alpha
Helix 77
AI5
B
795 797Right-handed 310
Helix 78
AI6
B
798 817Right-handed alpha
Helix 79
AI7
B
818 821Right-handed 310
Helix 80
AI8
B
834 854Right-handed alpha
Helix 81
AI9
B
855 860Right-handed alpha
Helix 82
AJ1
B
868 895Right-handed alpha
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There are 10 sheets in PDB entry 8UYB. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
172 175first strand
Strand 2
A
156 159anti-parallel
Strand 3
A
184 187anti-parallel
Strand 4
A
245 255anti-parallel
Strand 5
A
197 208anti-parallel
Strand 6
A
219 221anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
172 175first strand
Strand 2
A
156 159anti-parallel
Strand 3
A
184 187anti-parallel
Strand 4
A
245 255anti-parallel
Strand 5
A
197 208anti-parallel
Strand 6
A
239 240anti-parallel
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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
353 355first strand
Strand 2
A
671 673anti-parallel
Strand 3
A
654 658parallel
Strand 4
A
636 639parallel
Strand 5
A
369 372parallel
Strand 6
A
564 568parallel
Strand 7
A
613 615parallel
Strand 8
A
591 592parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
385 389first strand
Strand 2
A
535 544anti-parallel
Strand 3
A
511 521anti-parallel
Strand 4
A
462 470anti-parallel
Strand 5
A
451 459anti-parallel
Strand 6
A
438 443anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
385 389first strand
Strand 2
A
535 544anti-parallel
Strand 3
A
478 481parallel
Strand 4
A
488 489anti-parallel
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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
174 175first strand
Strand 2
B
156 159anti-parallel
Strand 3
B
184 187anti-parallel
Strand 4
B
245 255anti-parallel
Strand 5
B
197 208anti-parallel
Strand 6
B
219 221anti-parallel
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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
174 175first strand
Strand 2
B
156 159anti-parallel
Strand 3
B
184 187anti-parallel
Strand 4
B
245 255anti-parallel
Strand 5
B
197 208anti-parallel
Strand 6
B
239 240anti-parallel
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There are 8 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
353 355first strand
Strand 2
B
671 673anti-parallel
Strand 3
B
654 658parallel
Strand 4
B
636 639parallel
Strand 5
B
369 372parallel
Strand 6
B
564 568parallel
Strand 7
B
613 615parallel
Strand 8
B
591 592parallel
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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
385 389first strand
Strand 2
B
535 544anti-parallel
Strand 3
B
511 521anti-parallel
Strand 4
B
462 467anti-parallel
Strand 5
B
453 459anti-parallel
Strand 6
B
438 443anti-parallel
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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
385 389first strand
Strand 2
B
535 544anti-parallel
Strand 3
B
478 481parallel
Strand 4
B
488 489anti-parallel
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