Analysis of interatomic Contacts of Structural Units in PDB entry:
8UYF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8UYF entry


Note, this PDB entry contains modified residue(s) PHOSPHOTHREONINE (TPO) . This residue is treated as heterogroup (ligand) both in the PDB entry and in LPC/CSU analysis.

There are 4 chains in PDB entry 8UYF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 120LYS 304
A
 PRO 306TYR 574
B
 LYS 120LYS 304
B
 PRO 306TYR 574
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 27 helices in PDB entry 8UYF. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
120 137Right-handed alpha
Helix 2
AA2
A
203 215Right-handed alpha
Helix 3
AA3
A
297 304Right-handed alpha
Helix 4
AA4
A
307 328Right-handed alpha
Helix 5
AA5
A
388 393Right-handed alpha
Helix 6
AA6
A
406 420Right-handed alpha
Helix 7
AA7
A
451 462Right-handed alpha
Helix 8
AA8
A
471 485Right-handed alpha
Helix 9
AA9
A
486 490Right-handed 310
Helix 10
AB1
A
498 515Right-handed alpha
Helix 11
AB2
A
542 556Right-handed alpha
Helix 12
AB3
A
557 574Right-handed alpha
Helix 13
AB4
B
121 137Right-handed alpha
Helix 14
AB5
B
203 215Right-handed alpha
Helix 15
AB6
B
231 236Right-handed 310
Helix 16
AB7
B
297 304Right-handed alpha
Helix 17
AB8
B
307 328Right-handed alpha
Helix 18
AB9
B
357 361Right-handed 310
Helix 19
AC1
B
388 393Right-handed alpha
Helix 20
AC2
B
406 420Right-handed alpha
Helix 21
AC3
B
439 443Right-handed 310
Helix 22
AC4
B
451 462Right-handed alpha
Helix 23
AC5
B
471 485Right-handed alpha
Helix 24
AC6
B
486 491Right-handed alpha
Helix 25
AC7
B
498 516Right-handed alpha
Helix 26
AC8
B
542 555Right-handed alpha
Helix 27
AC9
B
557 574Right-handed alpha
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There are 7 sheets in PDB entry 8UYF. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
159 160first strand
Strand 2
A
171 178anti-parallel
Strand 3
A
165 166anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
159 160first strand
Strand 2
A
171 178anti-parallel
Strand 3
A
190 198anti-parallel
Strand 4
A
283 291anti-parallel
Strand 5
A
249 255anti-parallel
Strand 6
A
221 222parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
295 296first strand
Strand 2
A
340 343anti-parallel
Strand 3
A
352 355anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
370 372first strand
Strand 2
A
401 403anti-parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
165 166first strand
Strand 2
B
171 176anti-parallel
Strand 3
B
190 198anti-parallel
Strand 4
B
283 291anti-parallel
Strand 5
B
249 255anti-parallel
Strand 6
B
221 222parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
295 296first strand
Strand 2
B
340 343anti-parallel
Strand 3
B
352 355anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
370 372first strand
Strand 2
B
401 403anti-parallel
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