Analysis of interatomic Contacts of Structural Units in PDB entry:
8UYR


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8UYR entry

There are 2 chains in PDB entry 8UYR (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1SER 423
B
 MET 1HIS 422
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 61 helices in PDB entry 8UYR. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
2 6Right-handed 310
Helix 2
AA2
A
20 26Right-handed alpha
Helix 3
AA3
A
27 34Right-handed 310
Helix 4
AA4
A
68 72Right-handed 310
Helix 5
AA5
A
78 82Right-handed 310
Helix 6
AA6
A
83 87Right-handed 310
Helix 7
AA7
A
88 100Right-handed alpha
Helix 8
AA8
A
115 120Right-handed alpha
Helix 9
AA9
A
123 139Right-handed alpha
Helix 10
AB1
A
140 146Right-handed alpha
Helix 11
AB2
A
160 173Right-handed alpha
Helix 12
AB3
A
184 188Right-handed 310
Helix 13
AB4
A
194 198Right-handed 310
Helix 14
AB5
A
200 210Right-handed alpha
Helix 15
AB6
A
220 225Right-handed 310
Helix 16
AB7
A
232 240Right-handed alpha
Helix 17
AB8
A
241 243Right-handed 310
Helix 18
AB9
A
244 254Right-handed alpha
Helix 19
AC1
A
255 260Right-handed alpha
Helix 20
AC2
A
274 289Right-handed alpha
Helix 21
AC3
A
290 293Right-handed 310
Helix 22
AC4
A
302 310Right-handed alpha
Helix 23
AC5
A
320 323Right-handed 310
Helix 24
AC6
A
324 329Right-handed alpha
Helix 25
AC7
A
348 360Right-handed alpha
Helix 26
AC8
A
363 372Right-handed alpha
Helix 27
AC9
A
372 379Right-handed alpha
Helix 28
AD1
A
388 392Right-handed 310
Helix 29
AD2
A
393 399Right-handed alpha
Helix 30
AD3
A
410 422Right-handed alpha
Helix 31
AD4
B
2 6Right-handed 310
Helix 32
AD5
B
20 26Right-handed alpha
Helix 33
AD6
B
27 34Right-handed 310
Helix 34
AD7
B
68 72Right-handed 310
Helix 35
AD8
B
78 82Right-handed 310
Helix 36
AD9
B
83 87Right-handed 310
Helix 37
AE1
B
88 99Right-handed alpha
Helix 38
AE2
B
115 120Right-handed alpha
Helix 39
AE3
B
123 140Right-handed alpha
Helix 40
AE4
B
140 146Right-handed alpha
Helix 41
AE5
B
160 173Right-handed alpha
Helix 42
AE6
B
184 188Right-handed 310
Helix 43
AE7
B
194 198Right-handed 310
Helix 44
AE8
B
200 210Right-handed alpha
Helix 45
AE9
B
220 225Right-handed 310
Helix 46
AF1
B
232 240Right-handed alpha
Helix 47
AF2
B
241 243Right-handed 310
Helix 48
AF3
B
244 254Right-handed alpha
Helix 49
AF4
B
255 260Right-handed alpha
Helix 50
AF5
B
274 289Right-handed alpha
Helix 51
AF6
B
290 293Right-handed 310
Helix 52
AF7
B
302 310Right-handed alpha
Helix 53
AF8
B
320 323Right-handed 310
Helix 54
AF9
B
324 329Right-handed alpha
Helix 55
AG1
B
348 360Right-handed alpha
Helix 56
AG2
B
363 372Right-handed alpha
Helix 57
AG3
B
372 379Right-handed alpha
Helix 58
AG4
B
388 392Right-handed 310
Helix 59
AG5
B
393 399Right-handed alpha
Helix 60
AG6
B
400 402Right-handed 310
Helix 61
AG7
B
410 422Right-handed alpha
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There are 10 sheets in PDB entry 8UYR. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
8 9first strand
Strand 2
A
101 103parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
13 14first strand
Strand 2
A
106 107parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
36 40first strand
Strand 2
A
43 51anti-parallel
Strand 3
A
54 56anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
58 59first strand
Strand 2
A
76 77anti-parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
153 154first strand
Strand 2
A
178 180parallel
Strand 3
A
213 215parallel
Strand 4
A
265 267parallel
Strand 5
A
311 315parallel
Strand 6
A
333 335parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
8 9first strand
Strand 2
B
101 103parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
13 14first strand
Strand 2
B
106 107parallel
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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
36 40first strand
Strand 2
B
43 51anti-parallel
Strand 3
B
54 56anti-parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
58 59first strand
Strand 2
B
76 77anti-parallel
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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
153 154first strand
Strand 2
B
178 180parallel
Strand 3
B
213 215parallel
Strand 4
B
265 267parallel
Strand 5
B
311 315parallel
Strand 6
B
333 335parallel
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