Analysis of interatomic Contacts of Structural Units in PDB entry:
8UZ2

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8UZ2 entry

There are 9 chains in PDB entry 8UZ2 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASN 4	ALA 319
B	GLY 80	GLU 156
C	MET 1	LEU 446
D	SER 2	PRO 285
E	ASN 4	ALA 319
F	GLY 80	GLU 156
G	MET 1	LEU 446
H	VAL 23	PRO 285
I	SER 2	GLY 22

There are 86 helices in PDB entry 8UZ2. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	6	8	Right-handed 310
Helix 2	AA2	A	9	27	Right-handed alpha
Helix 3	AA3	A	32	55	Right-handed alpha
Helix 4	AA4	A	59	68	Right-handed alpha
Helix 5	AA5	A	74	83	Right-handed alpha
Helix 6	AA6	A	123	130	Right-handed alpha
Helix 7	AA7	A	131	134	Right-handed 310
Helix 8	AA8	A	136	153	Right-handed alpha
Helix 9	AA9	A	169	175	Right-handed alpha
Helix 10	AB1	A	176	189	Right-handed alpha
Helix 11	AB2	A	208	212	Right-handed 310
Helix 12	AB3	A	229	238	Right-handed alpha
Helix 13	AB4	A	243	252	Right-handed alpha
Helix 14	AB5	A	254	260	Right-handed alpha
Helix 15	AB6	A	278	296	Right-handed alpha
Helix 16	AB7	A	301	315	Right-handed alpha
Helix 17	AB8	C	11	24	Right-handed alpha
Helix 18	AB9	C	39	45	Right-handed alpha
Helix 19	AC1	C	62	73	Right-handed alpha
Helix 20	AC2	C	88	99	Right-handed alpha
Helix 21	AC3	C	106	115	Right-handed alpha
Helix 22	AC4	C	115	127	Right-handed alpha
Helix 23	AC5	C	141	153	Right-handed alpha
Helix 24	AC6	C	177	194	Right-handed alpha
Helix 25	AC7	C	249	267	Right-handed alpha
Helix 26	AC8	C	296	305	Right-handed alpha
Helix 27	AC9	C	307	317	Right-handed alpha
Helix 28	AD1	C	324	328	Right-handed 310
Helix 29	AD2	C	394	409	Right-handed alpha
Helix 30	AD3	C	417	427	Right-handed alpha
Helix 31	AD4	C	427	433	Right-handed alpha
Helix 32	AD5	C	438	444	Right-handed alpha
Helix 33	AD6	D	36	42	Right-handed alpha
Helix 34	AD7	D	56	65	Right-handed alpha
Helix 35	AD8	D	90	103	Right-handed alpha
Helix 36	AD9	D	129	133	Right-handed 310
Helix 37	AE1	D	135	152	Right-handed alpha
Helix 38	AE2	D	166	169	Right-handed 310
Helix 39	AE3	D	170	187	Right-handed alpha
Helix 40	AE4	D	203	208	Right-handed alpha
Helix 41	AE5	D	210	214	Right-handed 310
Helix 42	AE6	D	229	238	Right-handed alpha
Helix 43	AE7	D	247	255	Right-handed alpha
Helix 44	AE8	D	265	279	Right-handed alpha
Helix 45	AE9	E	9	27	Right-handed alpha
Helix 46	AF1	E	32	55	Right-handed alpha
Helix 47	AF2	E	59	68	Right-handed alpha
Helix 48	AF3	E	74	83	Right-handed alpha
Helix 49	AF4	E	123	130	Right-handed alpha
Helix 50	AF5	E	131	134	Right-handed 310
Helix 51	AF6	E	136	153	Right-handed alpha
Helix 52	AF7	E	169	175	Right-handed alpha
Helix 53	AF8	E	176	189	Right-handed alpha
Helix 54	AF9	E	208	212	Right-handed 310
Helix 55	AG1	E	229	238	Right-handed alpha
Helix 56	AG2	E	243	252	Right-handed alpha
Helix 57	AG3	E	254	260	Right-handed alpha
Helix 58	AG4	E	278	299	Right-handed alpha
Helix 59	AG5	E	301	315	Right-handed alpha
Helix 60	AG6	G	11	25	Right-handed alpha
Helix 61	AG7	G	39	45	Right-handed alpha
Helix 62	AG8	G	55	60	Right-handed alpha
Helix 63	AG9	G	62	74	Right-handed alpha
Helix 64	AH1	G	88	98	Right-handed alpha
Helix 65	AH2	G	106	115	Right-handed alpha
Helix 66	AH3	G	115	127	Right-handed alpha
Helix 67	AH4	G	141	153	Right-handed alpha
Helix 68	AH5	G	174	176	Right-handed 310
Helix 69	AH6	G	177	194	Right-handed alpha
Helix 70	AH7	G	249	267	Right-handed alpha
Helix 71	AH8	G	297	305	Right-handed alpha
Helix 72	AH9	G	307	318	Right-handed alpha
Helix 73	AI1	G	324	328	Right-handed 310
Helix 74	AI2	G	394	408	Right-handed alpha
Helix 75	AI3	G	417	427	Right-handed alpha
Helix 76	AI4	G	427	433	Right-handed alpha
Helix 77	AI5	G	438	445	Right-handed alpha
Helix 78	AI6	H	35	42	Right-handed alpha
Helix 79	AI7	H	56	65	Right-handed alpha
Helix 80	AI8	H	90	103	Right-handed alpha
Helix 81	AI9	H	129	133	Right-handed 310
Helix 82	AJ1	H	135	152	Right-handed alpha
Helix 83	AJ2	H	170	191	Right-handed alpha
Helix 84	AJ3	H	229	238	Right-handed alpha
Helix 85	AJ4	H	247	253	Right-handed alpha
Helix 86	AJ5	H	262	278	Right-handed alpha

There are 25 sheets in PDB entry 8UZ2. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	84	88	first strand
Strand 2	A	101	108	anti-parallel
Strand 3	A	111	118	anti-parallel
Strand 4	A	157	160	parallel
Strand 5	A	195	198	parallel
Strand 6	A	216	220	parallel
Strand 7	A	266	268	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	202	204	first strand
Strand 2	A	224	226	parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	81	85	first strand
Strand 2	B	150	155	anti-parallel
Strand 3	B	133	138	anti-parallel
Strand 4	B	106	109	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	124	128	first strand
Strand 2	B	114	119	anti-parallel
Strand 3	B	89	92	anti-parallel
Strand 4	B	145	146	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	47	52	first strand
Strand 2	C	27	33	parallel
Strand 3	C	4	7	parallel
Strand 4	C	77	79	parallel
Strand 5	C	101	102	parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	169	172	first strand
Strand 2	C	156	160	anti-parallel
Strand 3	C	198	202	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	222	229	first strand
Strand 2	C	208	217	anti-parallel
Strand 3	C	270	280	anti-parallel
Strand 4	C	283	284	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	222	229	first strand
Strand 2	C	208	217	anti-parallel
Strand 3	C	270	280	anti-parallel
Strand 4	C	289	290	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	232	234	first strand
Strand 2	C	237	243	anti-parallel
Strand 3	C	333	340	anti-parallel
Strand 4	C	384	392	anti-parallel
Strand 5	C	365	369	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	352	353	first strand
Strand 2	C	376	377	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	357	358	first strand
Strand 2	C	410	411	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	24	26	first strand
Strand 2	D	33	35	anti-parallel

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There are 7 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	71	73	first strand
Strand 2	D	108	115	anti-parallel
Strand 3	D	118	125	anti-parallel
Strand 4	D	156	162	parallel
Strand 5	D	194	202	parallel
Strand 6	D	216	219	parallel
Strand 7	D	259	260	parallel

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There are 7 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	84	88	first strand
Strand 2	E	101	108	anti-parallel
Strand 3	E	111	118	anti-parallel
Strand 4	E	157	160	parallel
Strand 5	E	195	198	parallel
Strand 6	E	216	220	parallel
Strand 7	E	266	268	parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	202	204	first strand
Strand 2	E	224	226	parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	81	84	first strand
Strand 2	F	151	155	anti-parallel
Strand 3	F	133	138	anti-parallel
Strand 4	F	106	109	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	125	128	first strand
Strand 2	F	114	119	anti-parallel
Strand 3	F	89	92	anti-parallel
Strand 4	F	144	146	anti-parallel

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There are 5 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	47	52	first strand
Strand 2	G	27	33	parallel
Strand 3	G	4	7	parallel
Strand 4	G	77	79	parallel
Strand 5	G	101	102	parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	169	172	first strand
Strand 2	G	156	160	anti-parallel
Strand 3	G	198	202	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	222	227	first strand
Strand 2	G	208	217	anti-parallel
Strand 3	G	270	280	anti-parallel
Strand 4	G	283	290	anti-parallel

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There are 5 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	229	234	first strand
Strand 2	G	237	243	anti-parallel
Strand 3	G	333	340	anti-parallel
Strand 4	G	384	392	anti-parallel
Strand 5	G	365	369	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	352	353	first strand
Strand 2	G	376	377	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	357	358	first strand
Strand 2	G	410	411	anti-parallel

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There are 5 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	71	73	first strand
Strand 2	H	109	115	anti-parallel
Strand 3	H	118	124	anti-parallel
Strand 4	H	156	162	parallel
Strand 5	H	194	202	parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	218	219	first strand
Strand 2	H	259	260	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8UZ2

Analysis of interatomic Contacts of Structural Units in PDB entry:
8UZ2