Analysis of interatomic Contacts of Structural Units in PDB entry:
8UZA


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8UZA entry

There are 4 chains in PDB entry 8UZA (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1GLY 1066
B
 C 1 U 135
C
 T 5 A 48
D
 T 31 T 50
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 35 helices in PDB entry 8UZA. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
46 77Right-handed alpha
Helix 2
AA2
A
81 87Right-handed alpha
Helix 3
AA3
A
88 91Right-handed 310
Helix 4
AA4
A
96 104Right-handed alpha
Helix 5
AA5
A
110 124Right-handed alpha
Helix 6
AA6
A
142 155Right-handed alpha
Helix 7
AA7
A
160 167Right-handed alpha
Helix 8
AA8
A
168 171Right-handed 310
Helix 9
AA9
A
187 205Right-handed alpha
Helix 10
AB1
A
210 222Right-handed alpha
Helix 11
AB2
A
253 268Right-handed alpha
Helix 12
AB3
A
280 294Right-handed alpha
Helix 13
AB4
A
299 306Right-handed alpha
Helix 14
AB5
A
337 351Right-handed alpha
Helix 15
AB6
A
354 358Right-handed 310
Helix 16
AB7
A
359 373Right-handed alpha
Helix 17
AB8
A
375 384Right-handed alpha
Helix 18
AB9
A
403 411Right-handed alpha
Helix 19
AC1
A
422 433Right-handed alpha
Helix 20
AC2
A
438 447Right-handed alpha
Helix 21
AC3
A
470 492Right-handed alpha
Helix 22
AC4
A
508 523Right-handed alpha
Helix 23
AC5
A
667 679Right-handed alpha
Helix 24
AC6
A
697 707Right-handed alpha
Helix 25
AC7
A
718 727Right-handed alpha
Helix 26
AC8
A
731 744Right-handed alpha
Helix 27
AC9
A
767 769Right-handed 310
Helix 28
AD1
A
770 775Right-handed alpha
Helix 29
AD2
A
777 785Right-handed alpha
Helix 30
AD3
A
791 796Right-handed alpha
Helix 31
AD4
A
842 844Right-handed 310
Helix 32
AD5
A
860 873Right-handed alpha
Helix 33
AD6
A
877 882Right-handed alpha
Helix 34
AD7
A
945 951Right-handed alpha
Helix 35
AD8
A
963 967Right-handed 310
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There are 9 sheets in PDB entry 8UZA. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
692 694first strand
Strand 2
A
497 499parallel
Strand 3
A
3 9parallel
Strand 4
A
13 20anti-parallel
Strand 5
A
28 33anti-parallel
Strand 6
A
804 805parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
275 277first strand
Strand 2
A
270 272anti-parallel
Strand 3
A
313 314anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
297 298first strand
Strand 2
A
332 334anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
822 826first strand
Strand 2
A
833 840anti-parallel
Strand 3
A
901 908anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
886 889first strand
Strand 2
A
895 899anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
912 913first strand
Strand 2
A
920 921anti-parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
937 944first strand
Strand 2
A
926 934anti-parallel
Strand 3
A
975 978anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
956 957first strand
Strand 2
A
968 969anti-parallel
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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1033 1037first strand
Strand 2
A
1023 1026anti-parallel
Strand 3
A
1003 1015anti-parallel
Strand 4
A
984 997anti-parallel
Strand 5
A
1044 1050anti-parallel
Strand 6
A
1056 1058anti-parallel
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