Analysis of interatomic Contacts of Structural Units in PDB entry:
8UZB


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8UZB entry

There are 4 chains in PDB entry 8UZB (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1GLY 1066
B
 C 1 U 135
C
 T 6 A 44
D
 T 31 A 46
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 36 helices in PDB entry 8UZB. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
47 78Right-handed alpha
Helix 2
AA2
A
81 89Right-handed alpha
Helix 3
AA3
A
96 104Right-handed alpha
Helix 4
AA4
A
110 124Right-handed alpha
Helix 5
AA5
A
142 155Right-handed alpha
Helix 6
AA6
A
159 167Right-handed alpha
Helix 7
AA7
A
168 171Right-handed 310
Helix 8
AA8
A
186 205Right-handed alpha
Helix 9
AA9
A
210 222Right-handed alpha
Helix 10
AB1
A
233 237Right-handed 310
Helix 11
AB2
A
253 268Right-handed alpha
Helix 12
AB3
A
280 294Right-handed alpha
Helix 13
AB4
A
299 306Right-handed alpha
Helix 14
AB5
A
324 329Right-handed alpha
Helix 15
AB6
A
336 351Right-handed alpha
Helix 16
AB7
A
353 358Right-handed 310
Helix 17
AB8
A
359 373Right-handed alpha
Helix 18
AB9
A
375 383Right-handed alpha
Helix 19
AC1
A
403 411Right-handed alpha
Helix 20
AC2
A
422 434Right-handed alpha
Helix 21
AC3
A
438 447Right-handed alpha
Helix 22
AC4
A
470 492Right-handed alpha
Helix 23
AC5
A
503 506Right-handed 310
Helix 24
AC6
A
508 523Right-handed alpha
Helix 25
AC7
A
667 679Right-handed alpha
Helix 26
AC8
A
696 707Right-handed alpha
Helix 27
AC9
A
718 729Right-handed alpha
Helix 28
AD1
A
731 748Right-handed alpha
Helix 29
AD2
A
767 774Right-handed alpha
Helix 30
AD3
A
777 785Right-handed alpha
Helix 31
AD4
A
791 796Right-handed alpha
Helix 32
AD5
A
842 844Right-handed 310
Helix 33
AD6
A
860 874Right-handed alpha
Helix 34
AD7
A
877 882Right-handed alpha
Helix 35
AD8
A
945 951Right-handed alpha
Helix 36
AD9
A
963 967Right-handed 310
Back to top of page

There are 10 sheets in PDB entry 8UZB. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
692 694first strand
Strand 2
A
497 501parallel
Strand 3
A
3 9parallel
Strand 4
A
13 20anti-parallel
Strand 5
A
26 33anti-parallel
Strand 6
A
804 805parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
276 278first strand
Strand 2
A
269 271anti-parallel
Strand 3
A
313 314anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
296 298first strand
Strand 2
A
332 335anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
387 388first strand
Strand 2
A
393 394anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
822 826first strand
Strand 2
A
833 840anti-parallel
Strand 3
A
901 908anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
887 889first strand
Strand 2
A
895 898anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
911 914first strand
Strand 2
A
919 922anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
937 944first strand
Strand 2
A
926 934anti-parallel
Strand 3
A
975 980anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
956 957first strand
Strand 2
A
968 969anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1033 1038first strand
Strand 2
A
1022 1027anti-parallel
Strand 3
A
1004 1016anti-parallel
Strand 4
A
984 996anti-parallel
Strand 5
A
1044 1050anti-parallel
Strand 6
A
1056 1058anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il