Analysis of interatomic Contacts of Structural Units in PDB entry:
8UZD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8UZD entry

There are 2 chains in PDB entry 8UZD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 CYS 25MET 366
B
 PHE 26MET 366
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 18 helices in PDB entry 8UZD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
25 47Right-handed alpha
Helix 2
AA2
A
48 53Right-handed 310
Helix 3
AA3
A
67 88Right-handed alpha
Helix 4
AA4
A
105 113Right-handed alpha
Helix 5
AA5
A
186 211Right-handed alpha
Helix 6
AA6
A
236 252Right-handed alpha
Helix 7
AA7
A
256 262Right-handed alpha
Helix 8
AA8
A
271 282Right-handed alpha
Helix 9
AA9
A
304 349Right-handed alpha
Helix 10
AB1
B
27 47Right-handed alpha
Helix 11
AB2
B
48 53Right-handed 310
Helix 12
AB3
B
67 88Right-handed alpha
Helix 13
AB4
B
105 113Right-handed alpha
Helix 14
AB5
B
186 211Right-handed alpha
Helix 15
AB6
B
236 252Right-handed alpha
Helix 16
AB7
B
256 262Right-handed alpha
Helix 17
AB8
B
271 282Right-handed alpha
Helix 18
AB9
B
304 349Right-handed alpha
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There is 1 sheet (AA1) in PDB entry 8UZD.

There are 14 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
128 134first strand
Strand 2
A
93 100parallel
Strand 3
A
55 61parallel
Strand 4
A
147 153parallel
Strand 5
A
212 224parallel
Strand 6
A
354 364anti-parallel
Strand 7
A
285 296anti-parallel
Strand 8
B
285 296anti-parallel
Strand 9
B
354 364anti-parallel
Strand 10
B
212 224anti-parallel
Strand 11
B
147 153parallel
Strand 12
B
55 61parallel
Strand 13
B
93 100parallel
Strand 14
B
128 134parallel
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