Analysis of interatomic Contacts of Structural Units in PDB entry:
8UZH

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8UZH entry

There are 2 chains in PDB entry 8UZH (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ILE 32	THR 680
B	LEU 34	THR 680

There are 49 helices in PDB entry 8UZH. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	56	64	Right-handed alpha
Helix 2	AA2	A	121	125	Right-handed 310
Helix 3	AA3	A	161	168	Right-handed alpha
Helix 4	AA4	A	168	176	Right-handed alpha
Helix 5	AA5	A	209	222	Right-handed alpha
Helix 6	AA6	A	240	247	Right-handed alpha
Helix 7	AA7	A	307	325	Right-handed alpha
Helix 8	AA8	A	333	337	Right-handed 310
Helix 9	AA9	A	348	366	Right-handed alpha
Helix 10	AB1	A	382	387	Right-handed 310
Helix 11	AB2	A	403	415	Right-handed alpha
Helix 12	AB3	A	417	425	Right-handed alpha
Helix 13	AB4	A	462	465	Right-handed 310
Helix 14	AB5	A	466	472	Right-handed alpha
Helix 15	AB6	A	478	483	Right-handed alpha
Helix 16	AB7	A	486	498	Right-handed alpha
Helix 17	AB8	A	535	540	Right-handed 310
Helix 18	AB9	A	544	548	Right-handed 310
Helix 19	AC1	A	564	571	Right-handed alpha
Helix 20	AC2	A	574	588	Right-handed alpha
Helix 21	AC3	A	590	595	Right-handed alpha
Helix 22	AC4	A	639	643	Right-handed 310
Helix 23	AC5	B	85	90	Right-handed 310
Helix 24	AC6	B	121	125	Right-handed 310
Helix 25	AC7	B	136	141	Right-handed alpha
Helix 26	AC8	B	147	151	Right-handed 310
Helix 27	AC9	B	161	168	Right-handed alpha
Helix 28	AD1	B	168	176	Right-handed alpha
Helix 29	AD2	B	209	223	Right-handed alpha
Helix 30	AD3	B	240	249	Right-handed alpha
Helix 31	AD4	B	307	325	Right-handed alpha
Helix 32	AD5	B	333	337	Right-handed 310
Helix 33	AD6	B	348	366	Right-handed alpha
Helix 34	AD7	B	382	387	Right-handed 310
Helix 35	AD8	B	388	392	Right-handed 310
Helix 36	AD9	B	403	415	Right-handed alpha
Helix 37	AE1	B	417	427	Right-handed alpha
Helix 38	AE2	B	462	465	Right-handed 310
Helix 39	AE3	B	466	472	Right-handed alpha
Helix 40	AE4	B	478	483	Right-handed alpha
Helix 41	AE5	B	486	498	Right-handed alpha
Helix 42	AE6	B	517	521	Right-handed 310
Helix 43	AE7	B	523	527	Right-handed 310
Helix 44	AE8	B	535	540	Right-handed 310
Helix 45	AE9	B	544	548	Right-handed 310
Helix 46	AF1	B	564	570	Right-handed alpha
Helix 47	AF2	B	574	588	Right-handed alpha
Helix 48	AF3	B	589	593	Right-handed 310
Helix 49	AF4	B	639	643	Right-handed 310

There are 14 sheets in PDB entry 8UZH. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	35	36	first strand
Strand 2	A	96	97	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	111	113	first strand
Strand 2	A	116	118	anti-parallel

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There are 9 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	143	145	first strand
Strand 2	A	179	182	parallel
Strand 3	A	226	232	parallel
Strand 4	A	328	332	parallel
Strand 5	A	370	373	parallel
Strand 6	A	398	400	parallel
Strand 7	A	435	439	parallel
Strand 8	A	503	507	parallel
Strand 9	A	143	145	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	186	187	first strand
Strand 2	A	199	203	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	260	261	first strand
Strand 2	A	291	293	anti-parallel
Strand 3	A	282	284	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	596	599	first strand
Strand 2	A	607	613	anti-parallel
Strand 3	A	621	627	anti-parallel
Strand 4	A	673	679	anti-parallel
Strand 5	A	646	649	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	633	637	first strand
Strand 2	A	664	668	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	42	44	first strand
Strand 2	B	35	37	anti-parallel
Strand 3	B	96	101	parallel
Strand 4	B	71	74	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	111	112	first strand
Strand 2	B	117	118	anti-parallel

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There are 9 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	143	145	first strand
Strand 2	B	179	182	parallel
Strand 3	B	226	232	parallel
Strand 4	B	328	332	parallel
Strand 5	B	370	373	parallel
Strand 6	B	398	400	parallel
Strand 7	B	435	439	parallel
Strand 8	B	503	507	parallel
Strand 9	B	143	145	parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	186	187	first strand
Strand 2	B	199	203	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	260	261	first strand
Strand 2	B	290	293	anti-parallel
Strand 3	B	282	285	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	596	599	first strand
Strand 2	B	607	613	anti-parallel
Strand 3	B	621	627	anti-parallel
Strand 4	B	673	679	anti-parallel
Strand 5	B	646	649	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	633	637	first strand
Strand 2	B	664	668	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8UZH

Analysis of interatomic Contacts of Structural Units in PDB entry:
8UZH