Analysis of interatomic Contacts of Structural Units in PDB entry:
8V00


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8V00 entry

There are 4 chains in PDB entry 8V00 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
D
 MET 1ASN 375
A
 LYS 4LYS 474
B
 LYS 4LYS 474
C
 LYS 4LYS 474
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 47 helices in PDB entry 8V00. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
D
7 20Right-handed alpha
Helix 2
AA2
D
28 51Right-handed alpha
Helix 3
AA3
D
54 81Right-handed alpha
Helix 4
AA4
D
81 101Right-handed alpha
Helix 5
AA5
D
104 144Right-handed alpha
Helix 6
AA6
D
163 210Right-handed alpha
Helix 7
AA7
D
219 271Right-handed alpha
Helix 8
AA8
D
277 316Right-handed alpha
Helix 9
AA9
D
323 338Right-handed alpha
Helix 10
AB1
D
352 375Right-handed alpha
Helix 11
AB2
A
12 23Right-handed alpha
Helix 12
AB3
A
31 33Right-handed 310
Helix 13
AB4
A
34 63Right-handed alpha
Helix 14
AB5
A
67 93Right-handed alpha
Helix 15
AB6
A
93 102Right-handed alpha
Helix 16
AB7
A
103 106Right-handed 310
Helix 17
AB8
A
113 153Right-handed alpha
Helix 18
AB9
A
187 242Right-handed alpha
Helix 19
AC1
A
315 371Right-handed alpha
Helix 20
AC2
A
375 416Right-handed alpha
Helix 21
AC3
A
423 437Right-handed alpha
Helix 22
AC4
A
452 474Right-handed alpha
Helix 23
AC5
B
12 23Right-handed alpha
Helix 24
AC6
B
31 33Right-handed 310
Helix 25
AC7
B
34 63Right-handed alpha
Helix 26
AC8
B
67 93Right-handed alpha
Helix 27
AC9
B
93 102Right-handed alpha
Helix 28
AD1
B
103 106Right-handed 310
Helix 29
AD2
B
113 153Right-handed alpha
Helix 30
AD3
B
187 242Right-handed alpha
Helix 31
AD4
B
315 370Right-handed alpha
Helix 32
AD5
B
375 416Right-handed alpha
Helix 33
AD6
B
423 437Right-handed alpha
Helix 34
AD7
B
452 474Right-handed alpha
Helix 35
AD8
C
12 22Right-handed alpha
Helix 36
AD9
C
31 33Right-handed 310
Helix 37
AE1
C
34 63Right-handed alpha
Helix 38
AE2
C
67 93Right-handed alpha
Helix 39
AE3
C
93 102Right-handed alpha
Helix 40
AE4
C
103 106Right-handed 310
Helix 41
AE5
C
113 153Right-handed alpha
Helix 42
AE6
C
187 242Right-handed alpha
Helix 43
AE7
C
315 370Right-handed alpha
Helix 44
AE8
C
375 416Right-handed alpha
Helix 45
AE9
C
418 422Right-handed 310
Helix 46
AF1
C
423 437Right-handed alpha
Helix 47
AF2
C
452 474Right-handed alpha
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There are 3 sheets in PDB entry 8V00. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
344 345first strand
Strand 2
D
349 350anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
156 157first strand
Strand 2
B
170 171anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
156 157first strand
Strand 2
C
170 171anti-parallel
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