Analysis of interatomic Contacts of Structural Units in PDB entry:
8V04


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8V04 entry

There are 2 chains in PDB entry 8V04 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 147SER 250
B
 ILE 256GLU 493
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 7 helices in PDB entry 8V04. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
177 188Right-handed alpha
Helix 2
AA2
A
220 223Right-handed 310
Helix 3
AA3
B
294 299Right-handed 310
Helix 4
AA4
B
304 307Right-handed 310
Helix 5
AA5
B
316 320Right-handed 310
Helix 6
AA6
B
406 411Right-handed alpha
Helix 7
AA7
B
477 491Right-handed alpha
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There are 5 sheets in PDB entry 8V04. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
149 152first strand
Strand 2
A
157 162anti-parallel
Strand 3
A
167 170anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
196 200first strand
Strand 2
A
236 240anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
210 212first strand
Strand 2
A
225 227anti-parallel
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There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
260 261first strand
Strand 2
B
398 405anti-parallel
Strand 3
B
424 428anti-parallel
Strand 4
B
472 476anti-parallel
Strand 5
B
452 461anti-parallel
Strand 6
B
444 449anti-parallel
Strand 7
B
378 383anti-parallel
Strand 8
B
398 405anti-parallel
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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
270 275first strand
Strand 2
B
278 285anti-parallel
Strand 3
B
290 293anti-parallel
Strand 4
B
347 351anti-parallel
Strand 5
B
326 333anti-parallel
Strand 6
B
309 312anti-parallel
Strand 7
B
270 275anti-parallel
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