Analysis of interatomic Contacts of Structural Units in PDB entry:
8V05


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8V05 entry

There is 1 chain in PDB entry 8V05 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 63LEU 488
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 18 helices in PDB entry 8V05. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
104 116Right-handed alpha
Helix 2
AA2
A
130 135Right-handed alpha
Helix 3
AA3
A
138 140Right-handed 310
Helix 4
AA4
A
141 153Right-handed alpha
Helix 5
AA5
A
154 158Right-handed 310
Helix 6
AA6
A
172 182Right-handed alpha
Helix 7
AA7
A
189 195Right-handed alpha
Helix 8
AA8
A
219 224Right-handed alpha
Helix 9
AA9
A
235 253Right-handed alpha
Helix 10
AB1
A
264 268Right-handed 310
Helix 11
AB2
A
294 298Right-handed 310
Helix 12
AB3
A
304 316Right-handed alpha
Helix 13
AB4
A
341 355Right-handed alpha
Helix 14
AB5
A
371 381Right-handed alpha
Helix 15
AB6
A
401 406Right-handed alpha
Helix 16
AB7
A
433 438Right-handed alpha
Helix 17
AB8
A
452 468Right-handed alpha
Helix 18
AB9
A
477 481Right-handed 310
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There are 4 sheets in PDB entry 8V05. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 16 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
184 188first strand
Strand 2
A
160 166parallel
Strand 3
A
119 124parallel
Strand 4
A
202 205anti-parallel
Strand 5
A
209 213anti-parallel
Strand 6
A
227 233anti-parallel
Strand 7
A
80 88anti-parallel
Strand 8
A
277 281parallel
Strand 9
A
284 293anti-parallel
Strand 10
A
441 447anti-parallel
Strand 11
A
423 427anti-parallel
Strand 12
A
416 420anti-parallel
Strand 13
A
319 324anti-parallel
Strand 14
A
357 363parallel
Strand 15
A
390 396parallel
Strand 16
A
471 472anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
127 128first strand
Strand 2
A
217 218parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
327 328first strand
Strand 2
A
431 432parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
330 331first strand
Strand 2
A
338 339anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il