Analysis of interatomic Contacts of Structural Units in PDB entry:
8V07

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8V07 entry

There are 4 chains in PDB entry 8V07 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
B	GLN 72	LEU 488
A	GLN 72	LEU 488
C	GLN 72	LEU 488
D	GLN 72	LEU 488

There are 70 helices in PDB entry 8V07. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	B	104	116	Right-handed alpha
Helix 2	AA2	B	130	135	Right-handed alpha
Helix 3	AA3	B	138	140	Right-handed 310
Helix 4	AA4	B	141	153	Right-handed alpha
Helix 5	AA5	B	154	158	Right-handed 310
Helix 6	AA6	B	172	181	Right-handed alpha
Helix 7	AA7	B	189	195	Right-handed alpha
Helix 8	AA8	B	219	224	Right-handed alpha
Helix 9	AA9	B	235	253	Right-handed alpha
Helix 10	AB1	B	264	268	Right-handed 310
Helix 11	AB2	B	294	298	Right-handed 310
Helix 12	AB3	B	304	316	Right-handed alpha
Helix 13	AB4	B	341	355	Right-handed alpha
Helix 14	AB5	B	371	381	Right-handed alpha
Helix 15	AB6	B	403	407	Right-handed 310
Helix 16	AB7	B	433	438	Right-handed alpha
Helix 17	AB8	B	453	468	Right-handed alpha
Helix 18	AB9	B	477	481	Right-handed 310
Helix 19	AC1	A	104	116	Right-handed alpha
Helix 20	AC2	A	130	135	Right-handed alpha
Helix 21	AC3	A	138	140	Right-handed 310
Helix 22	AC4	A	141	153	Right-handed alpha
Helix 23	AC5	A	154	158	Right-handed 310
Helix 24	AC6	A	172	181	Right-handed alpha
Helix 25	AC7	A	189	195	Right-handed alpha
Helix 26	AC8	A	219	224	Right-handed alpha
Helix 27	AC9	A	235	253	Right-handed alpha
Helix 28	AD1	A	264	268	Right-handed 310
Helix 29	AD2	A	294	298	Right-handed 310
Helix 30	AD3	A	304	316	Right-handed alpha
Helix 31	AD4	A	341	355	Right-handed alpha
Helix 32	AD5	A	371	381	Right-handed alpha
Helix 33	AD6	A	403	407	Right-handed 310
Helix 34	AD7	A	433	438	Right-handed alpha
Helix 35	AD8	A	454	468	Right-handed alpha
Helix 36	AD9	A	477	481	Right-handed 310
Helix 37	AE1	C	104	115	Right-handed alpha
Helix 38	AE2	C	138	140	Right-handed 310
Helix 39	AE3	C	141	153	Right-handed alpha
Helix 40	AE4	C	154	158	Right-handed 310
Helix 41	AE5	C	172	181	Right-handed alpha
Helix 42	AE6	C	189	195	Right-handed alpha
Helix 43	AE7	C	219	224	Right-handed alpha
Helix 44	AE8	C	235	253	Right-handed alpha
Helix 45	AE9	C	264	268	Right-handed 310
Helix 46	AF1	C	294	298	Right-handed 310
Helix 47	AF2	C	304	316	Right-handed alpha
Helix 48	AF3	C	341	355	Right-handed alpha
Helix 49	AF4	C	371	381	Right-handed alpha
Helix 50	AF5	C	403	407	Right-handed 310
Helix 51	AF6	C	433	438	Right-handed alpha
Helix 52	AF7	C	453	467	Right-handed alpha
Helix 53	AF8	C	477	481	Right-handed 310
Helix 54	AF9	D	104	115	Right-handed alpha
Helix 55	AG1	D	138	140	Right-handed 310
Helix 56	AG2	D	141	153	Right-handed alpha
Helix 57	AG3	D	154	158	Right-handed 310
Helix 58	AG4	D	172	181	Right-handed alpha
Helix 59	AG5	D	189	195	Right-handed alpha
Helix 60	AG6	D	219	224	Right-handed alpha
Helix 61	AG7	D	235	254	Right-handed alpha
Helix 62	AG8	D	264	268	Right-handed 310
Helix 63	AG9	D	294	298	Right-handed 310
Helix 64	AH1	D	304	316	Right-handed alpha
Helix 65	AH2	D	341	355	Right-handed alpha
Helix 66	AH3	D	371	381	Right-handed alpha
Helix 67	AH4	D	403	407	Right-handed 310
Helix 68	AH5	D	433	438	Right-handed alpha
Helix 69	AH6	D	454	468	Right-handed alpha
Helix 70	AH7	D	477	481	Right-handed 310

There are 11 sheets in PDB entry 8V07. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2,

There are 16 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	184	188	first strand
Strand 2	B	160	166	parallel
Strand 3	B	119	124	parallel
Strand 4	B	202	205	anti-parallel
Strand 5	B	209	213	anti-parallel
Strand 6	B	227	233	anti-parallel
Strand 7	B	80	88	anti-parallel
Strand 8	B	277	281	parallel
Strand 9	B	284	293	anti-parallel
Strand 10	B	441	448	anti-parallel
Strand 11	B	423	427	anti-parallel
Strand 12	B	416	420	anti-parallel
Strand 13	B	319	324	anti-parallel
Strand 14	B	357	363	parallel
Strand 15	B	390	396	parallel
Strand 16	B	471	473	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	127	128	first strand
Strand 2	B	217	218	parallel

Back to list of sheets
Back to top of page

There are 16 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	184	188	first strand
Strand 2	A	160	166	parallel
Strand 3	A	119	124	parallel
Strand 4	A	202	205	anti-parallel
Strand 5	A	209	213	anti-parallel
Strand 6	A	227	233	anti-parallel
Strand 7	A	80	88	anti-parallel
Strand 8	A	277	281	parallel
Strand 9	A	284	293	anti-parallel
Strand 10	A	441	447	anti-parallel
Strand 11	A	424	427	anti-parallel
Strand 12	A	416	420	anti-parallel
Strand 13	A	319	324	anti-parallel
Strand 14	A	357	363	parallel
Strand 15	A	391	396	parallel
Strand 16	A	471	473	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	127	128	first strand
Strand 2	A	217	218	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	327	328	first strand
Strand 2	A	431	432	parallel

Back to list of sheets
Back to top of page

There are 16 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	184	188	first strand
Strand 2	C	160	166	parallel
Strand 3	C	119	124	parallel
Strand 4	C	202	205	anti-parallel
Strand 5	C	209	213	anti-parallel
Strand 6	C	227	233	anti-parallel
Strand 7	C	80	88	anti-parallel
Strand 8	C	277	281	parallel
Strand 9	C	284	293	anti-parallel
Strand 10	C	441	447	anti-parallel
Strand 11	C	424	427	anti-parallel
Strand 12	C	416	420	anti-parallel
Strand 13	C	319	324	anti-parallel
Strand 14	C	357	363	parallel
Strand 15	C	390	396	parallel
Strand 16	C	471	472	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	127	128	first strand
Strand 2	C	217	218	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	327	328	first strand
Strand 2	C	431	432	parallel

Back to list of sheets
Back to top of page

There are 16 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	184	188	first strand
Strand 2	D	160	166	parallel
Strand 3	D	119	124	parallel
Strand 4	D	202	205	anti-parallel
Strand 5	D	209	213	anti-parallel
Strand 6	D	227	233	anti-parallel
Strand 7	D	80	88	anti-parallel
Strand 8	D	277	281	parallel
Strand 9	D	284	293	anti-parallel
Strand 10	D	441	447	anti-parallel
Strand 11	D	424	427	anti-parallel
Strand 12	D	416	420	anti-parallel
Strand 13	D	319	324	anti-parallel
Strand 14	D	357	363	parallel
Strand 15	D	390	396	parallel
Strand 16	D	471	472	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	127	128	first strand
Strand 2	D	217	218	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	327	328	first strand
Strand 2	D	431	432	parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8V07

Analysis of interatomic Contacts of Structural Units in PDB entry:
8V07