Analysis of interatomic Contacts of Structural Units in PDB entry:
8V08


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8V08 entry

There are 5 chains in PDB entry 8V08 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 CYS 94ASN 427
A
 SER 429GLN 505
B
 CYS 94GLN 505
C
 T 1 T 3
D
 T 1 T 3
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 27 helices in PDB entry 8V08. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
118 129Right-handed alpha
Helix 2
AA2
A
153 170Right-handed alpha
Helix 3
AA3
A
188 195Right-handed alpha
Helix 4
AA4
A
204 210Right-handed alpha
Helix 5
AA5
A
234 239Right-handed alpha
Helix 6
AA6
A
250 252Right-handed 310
Helix 7
AA7
A
253 268Right-handed alpha
Helix 8
AA8
A
309 313Right-handed 310
Helix 9
AA9
A
319 331Right-handed alpha
Helix 10
AB1
A
356 369Right-handed alpha
Helix 11
AB2
A
386 396Right-handed alpha
Helix 12
AB3
A
397 398Right-handed 310
Helix 13
AB4
A
399 403Right-handed 310
Helix 14
AB5
A
473 486Right-handed alpha
Helix 15
AB6
B
118 129Right-handed alpha
Helix 16
AB7
B
154 170Right-handed alpha
Helix 17
AB8
B
188 197Right-handed alpha
Helix 18
AB9
B
204 210Right-handed alpha
Helix 19
AC1
B
234 239Right-handed alpha
Helix 20
AC2
B
250 267Right-handed alpha
Helix 21
AC3
B
309 313Right-handed 310
Helix 22
AC4
B
319 331Right-handed alpha
Helix 23
AC5
B
356 369Right-handed alpha
Helix 24
AC6
B
386 396Right-handed alpha
Helix 25
AC7
B
397 398Right-handed 310
Helix 26
AC8
B
399 403Right-handed 310
Helix 27
AC9
B
473 486Right-handed alpha
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There are 6 sheets in PDB entry 8V08. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
116 117first strand
Strand 2
A
95 101parallel
Strand 3
A
242 248anti-parallel
Strand 4
A
224 228anti-parallel
Strand 5
A
217 220anti-parallel
Strand 6
A
133 136anti-parallel
Strand 7
A
175 179parallel
Strand 8
A
199 202parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
140 141first strand
Strand 2
A
232 233parallel
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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
302 308first strand
Strand 2
A
455 461anti-parallel
Strand 3
A
437 441anti-parallel
Strand 4
A
431 433anti-parallel
Strand 5
A
334 339anti-parallel
Strand 6
A
372 379parallel
Strand 7
A
405 412parallel
Strand 8
A
490 492anti-parallel
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There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
116 117first strand
Strand 2
B
95 101parallel
Strand 3
B
242 248anti-parallel
Strand 4
B
224 228anti-parallel
Strand 5
B
217 220anti-parallel
Strand 6
B
133 136anti-parallel
Strand 7
B
175 179parallel
Strand 8
B
199 202parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
140 141first strand
Strand 2
B
232 233parallel
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There are 8 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
302 308first strand
Strand 2
B
455 461anti-parallel
Strand 3
B
438 441anti-parallel
Strand 4
B
431 433anti-parallel
Strand 5
B
334 339anti-parallel
Strand 6
B
372 379parallel
Strand 7
B
405 412parallel
Strand 8
B
490 491anti-parallel
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