Analysis of interatomic Contacts of Structural Units in PDB entry:
8V09


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8V09 entry

There is 1 chain in PDB entry 8V09 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 2LYS 249
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 15 helices in PDB entry 8V09. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
16 29Right-handed alpha
Helix 2
AA2
A
43 45Right-handed 310
Helix 3
AA3
A
46 54Right-handed alpha
Helix 4
AA4
A
78 85Right-handed alpha
Helix 5
AA5
A
94 100Right-handed alpha
Helix 6
AA6
A
104 118Right-handed alpha
Helix 7
AA7
A
129 135Right-handed alpha
Helix 8
AA8
A
137 153Right-handed alpha
Helix 9
AA9
A
155 159Right-handed 310
Helix 10
AB1
A
167 171Right-handed 310
Helix 11
AB2
A
178 197Right-handed alpha
Helix 12
AB3
A
198 205Right-handed alpha
Helix 13
AB4
A
217 223Right-handed alpha
Helix 14
AB5
A
233 239Right-handed 310
Helix 15
AB6
A
240 246Right-handed alpha
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There is 1 sheet (AA1) in PDB entry 8V09.

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
6 10first strand
Strand 2
A
37 41parallel
Strand 3
A
58 62parallel
Strand 4
A
89 92parallel
Strand 5
A
121 126parallel
Strand 6
A
161 165parallel
Strand 7
A
207 210parallel
Strand 8
A
229 232parallel
Strand 9
A
6 10parallel
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