Analysis of interatomic Contacts of Structural Units in PDB entry:
8V0D


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8V0D entry

There are 2 chains in PDB entry 8V0D (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 SER 0TYR 1006
A
 SER 0TYR 1006
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 15 helices in PDB entry 8V0D. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
B
0 16Right-handed alpha
Helix 2
AA2
B
86 90Right-handed 310
Helix 3
AA3
B
98 112Right-handed alpha
Helix 4
AA4
B
120 130Right-handed alpha
Helix 5
AA5
B
130 146Right-handed alpha
Helix 6
AA6
B
944 962Right-handed alpha
Helix 7
AA7
B
982 987Right-handed alpha
Helix 8
AA8
A
1 16Right-handed alpha
Helix 9
AA9
A
86 90Right-handed 310
Helix 10
AB1
A
98 112Right-handed alpha
Helix 11
AB2
A
120 130Right-handed alpha
Helix 12
AB3
A
130 146Right-handed alpha
Helix 13
AB4
A
949 955Right-handed alpha
Helix 14
AB5
A
956 962Right-handed alpha
Helix 15
AB6
A
982 987Right-handed alpha
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There are 4 sheets in PDB entry 8V0D. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
22 25first strand
Strand 2
B
32 38anti-parallel
Strand 3
B
49 55anti-parallel
Strand 4
B
66 69anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
980 981first strand
Strand 2
B
973 975anti-parallel
Strand 3
B
1002 1004anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
21 25first strand
Strand 2
A
32 38anti-parallel
Strand 3
A
49 55anti-parallel
Strand 4
A
66 69anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
980 981first strand
Strand 2
A
973 974anti-parallel
Strand 3
A
1003 1004anti-parallel
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