Analysis of interatomic Contacts of Structural Units in PDB entry:
8V0F


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8V0F entry

There are 6 chains in PDB entry 8V0F (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 621GLU 934
B
 ALA 621GLU 934
C
 ALA 621LEU 933
D
 ALA 621LEU 933
E
 ALA 621LEU 933
F
 ALA 621GLU 934
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are112 helices in PDB entry 8V0F. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
621 635Right-handed alpha
Helix 2
AA2
A
640 648Right-handed alpha
Helix 3
AA3
A
648 657Right-handed alpha
Helix 4
AA4
A
661 675Right-handed alpha
Helix 5
AA5
A
677 704Right-handed alpha
Helix 6
AA6
A
714 717Right-handed 310
Helix 7
AA7
A
719 740Right-handed alpha
Helix 8
AA8
A
743 771Right-handed alpha
Helix 9
AA9
A
775 787Right-handed alpha
Helix 10
AB1
A
787 799Right-handed alpha
Helix 11
AB2
A
808 829Right-handed alpha
Helix 12
AB3
A
841 846Right-handed alpha
Helix 13
AB4
A
849 859Right-handed alpha
Helix 14
AB5
A
864 872Right-handed alpha
Helix 15
AB6
A
875 890Right-handed alpha
Helix 16
AB7
A
891 915Right-handed alpha
Helix 17
AB8
A
921 931Right-handed alpha
Helix 18
AB9
B
622 635Right-handed alpha
Helix 19
AC1
B
640 648Right-handed alpha
Helix 20
AC2
B
648 656Right-handed alpha
Helix 21
AC3
B
661 675Right-handed alpha
Helix 22
AC4
B
677 704Right-handed alpha
Helix 23
AC5
B
714 717Right-handed 310
Helix 24
AC6
B
719 739Right-handed alpha
Helix 25
AC7
B
740 742Right-handed 310
Helix 26
AC8
B
743 771Right-handed alpha
Helix 27
AC9
B
775 787Right-handed alpha
Helix 28
AD1
B
787 799Right-handed alpha
Helix 29
AD2
B
800 802Right-handed 310
Helix 30
AD3
B
808 829Right-handed alpha
Helix 31
AD4
B
841 846Right-handed alpha
Helix 32
AD5
B
849 859Right-handed alpha
Helix 33
AD6
B
864 872Right-handed alpha
Helix 34
AD7
B
875 889Right-handed alpha
Helix 35
AD8
B
891 915Right-handed alpha
Helix 36
AD9
B
921 931Right-handed alpha
Helix 37
AE1
C
622 635Right-handed alpha
Helix 38
AE2
C
640 648Right-handed alpha
Helix 39
AE3
C
648 657Right-handed alpha
Helix 40
AE4
C
661 675Right-handed alpha
Helix 41
AE5
C
677 704Right-handed alpha
Helix 42
AE6
C
714 717Right-handed 310
Helix 43
AE7
C
719 739Right-handed alpha
Helix 44
AE8
C
740 742Right-handed 310
Helix 45
AE9
C
743 771Right-handed alpha
Helix 46
AF1
C
775 787Right-handed alpha
Helix 47
AF2
C
787 799Right-handed alpha
Helix 48
AF3
C
800 802Right-handed 310
Helix 49
AF4
C
808 826Right-handed alpha
Helix 50
AF5
C
841 846Right-handed alpha
Helix 51
AF6
C
849 859Right-handed alpha
Helix 52
AF7
C
863 872Right-handed alpha
Helix 53
AF8
C
875 889Right-handed alpha
Helix 54
AF9
C
890 915Right-handed alpha
Helix 55
AG1
C
921 931Right-handed alpha
Helix 56
AG2
D
622 635Right-handed alpha
Helix 57
AG3
D
640 648Right-handed alpha
Helix 58
AG4
D
648 657Right-handed alpha
Helix 59
AG5
D
661 675Right-handed alpha
Helix 60
AG6
D
677 703Right-handed alpha
Helix 61
AG7
D
714 717Right-handed 310
Helix 62
AG8
D
719 739Right-handed alpha
Helix 63
AG9
D
740 742Right-handed 310
Helix 64
AH1
D
743 771Right-handed alpha
Helix 65
AH2
D
775 787Right-handed alpha
Helix 66
AH3
D
787 799Right-handed alpha
Helix 67
AH4
D
800 802Right-handed 310
Helix 68
AH5
D
808 829Right-handed alpha
Helix 69
AH6
D
841 846Right-handed alpha
Helix 70
AH7
D
849 859Right-handed alpha
Helix 71
AH8
D
864 872Right-handed alpha
Helix 72
AH9
D
875 889Right-handed alpha
Helix 73
AI1
D
891 915Right-handed alpha
Helix 74
AI2
D
921 931Right-handed alpha
Helix 75
AI3
E
622 635Right-handed alpha
Helix 76
AI4
E
640 648Right-handed alpha
Helix 77
AI5
E
648 657Right-handed alpha
Helix 78
AI6
E
661 675Right-handed alpha
Helix 79
AI7
E
677 704Right-handed alpha
Helix 80
AI8
E
714 717Right-handed 310
Helix 81
AI9
E
719 739Right-handed alpha
Helix 82
AJ1
E
740 742Right-handed 310
Helix 83
AJ2
E
743 771Right-handed alpha
Helix 84
AJ3
E
775 787Right-handed alpha
Helix 85
AJ4
E
787 797Right-handed alpha
Helix 86
AJ5
E
798 802Right-handed 310
Helix 87
AJ6
E
808 828Right-handed alpha
Helix 88
AJ7
E
841 846Right-handed alpha
Helix 89
AJ8
E
849 858Right-handed alpha
Helix 90
AJ9
E
864 869Right-handed alpha
Helix 91
AK1
E
876 889Right-handed alpha
Helix 92
AK2
E
890 914Right-handed alpha
Helix 93
AK3
E
915 917Right-handed 310
Helix 94
AK4
E
922 931Right-handed alpha
Helix 95
AK5
F
624 635Right-handed alpha
Helix 96
AK6
F
640 648Right-handed alpha
Helix 97
AK7
F
648 657Right-handed alpha
Helix 98
AK8
F
661 675Right-handed alpha
Helix 99
AK9
F
677 703Right-handed alpha
Helix 100
AL1
F
714 717Right-handed 310
Helix 101
AL2
F
720 739Right-handed alpha
Helix 102
AL3
F
740 742Right-handed 310
Helix 103
AL4
F
743 771Right-handed alpha
Helix 104
AL5
F
775 787Right-handed alpha
Helix 105
AL6
F
787 799Right-handed alpha
Helix 106
AL7
F
808 829Right-handed alpha
Helix 107
AL8
F
841 846Right-handed alpha
Helix 108
AL9
F
849 859Right-handed alpha
Helix 109
AM1
F
864 872Right-handed alpha
Helix 110
AM2
F
875 890Right-handed alpha
Helix 111
AM3
F
890 915Right-handed alpha
Helix 112
AM4
F
921 931Right-handed alpha
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There are 6 sheets in PDB entry 8V0F. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
707 708first strand
Strand 2
A
711 712anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
707 708first strand
Strand 2
B
711 712anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
707 708first strand
Strand 2
C
711 712anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
707 708first strand
Strand 2
D
711 712anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
707 708first strand
Strand 2
E
711 712anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
707 708first strand
Strand 2
F
711 712anti-parallel
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