Analysis of interatomic Contacts of Structural Units in PDB entry:
8V0Z


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8V0Z entry

There are 2 chains in PDB entry 8V0Z (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 55MET 275
B
 CYS 56ALA 276
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 8V0Z. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
93 108Right-handed alpha
Helix 2
AA2
A
117 123Right-handed alpha
Helix 3
AA3
A
123 134Right-handed alpha
Helix 4
AA4
A
147 165Right-handed alpha
Helix 5
AA5
A
171 184Right-handed alpha
Helix 6
AA6
A
202 223Right-handed alpha
Helix 7
AA7
B
93 108Right-handed alpha
Helix 8
AA8
B
118 123Right-handed alpha
Helix 9
AA9
B
123 134Right-handed alpha
Helix 10
AB1
B
145 169Right-handed alpha
Helix 11
AB2
B
171 186Right-handed alpha
Helix 12
AB3
B
195 223Right-handed alpha
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There are 6 sheets in PDB entry 8V0Z. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
87 89first strand
Strand 2
A
72 78anti-parallel
Strand 3
A
60 66anti-parallel
Strand 4
A
112 115parallel
Strand 5
A
137 138parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
225 227first strand
Strand 2
A
236 239anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
243 244first strand
Strand 2
A
248 250anti-parallel
Strand 3
A
260 261anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
73 77first strand
Strand 2
B
84 88anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
112 114first strand
Strand 2
B
136 138parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
241 245first strand
Strand 2
B
248 253anti-parallel
Strand 3
B
256 261anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il