Analysis of interatomic Contacts of Structural Units in PDB entry:
8V11


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8V11 entry

There are 8 chains in PDB entry 8V11 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 113GLU 684
B
 ILE 48GLN 1451
C
 ASN 6GLY 212
D
 ALA 2SER 220
E
 ALA 113GLU 684
F
 ILE 48GLN 1451
G
 ASN 6GLY 212
H
 SER 3SER 220
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 53 helices in PDB entry 8V11. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
121 139Right-handed alpha
Helix 2
AA2
A
140 145Right-handed alpha
Helix 3
AA3
A
150 156Right-handed alpha
Helix 4
AA4
A
158 174Right-handed alpha
Helix 5
AA5
A
182 185Right-handed 310
Helix 6
AA6
A
186 195Right-handed alpha
Helix 7
AA7
A
203 208Right-handed 310
Helix 8
AA8
A
214 253Right-handed alpha
Helix 9
AA9
A
263 292Right-handed alpha
Helix 10
AB1
A
297 680Right-handed alpha
Helix 11
AB2
B
56 63Right-handed alpha
Helix 12
AB3
B
1012 1023Right-handed alpha
Helix 13
AB4
B
1029 1035Right-handed alpha
Helix 14
AB5
B
1040 1054Right-handed alpha
Helix 15
AB6
B
1056 1065Right-handed alpha
Helix 16
AB7
B
1083 1101Right-handed alpha
Helix 17
AB8
B
1107 1113Right-handed alpha
Helix 18
AB9
B
1115 1136Right-handed alpha
Helix 19
AC1
B
1137 1139Right-handed 310
Helix 20
AC2
B
1140 1448Right-handed alpha
Helix 21
AC3
C
10 21Right-handed alpha
Helix 22
AC4
C
23 168Right-handed alpha
Helix 23
AC5
C
202 210Right-handed alpha
Helix 24
AC6
D
6 25Right-handed alpha
Helix 25
AC7
D
138 146Right-handed alpha
Helix 26
AC8
D
189 200Right-handed alpha
Helix 27
AC9
D
205 220Right-handed alpha
Helix 28
AD1
E
121 139Right-handed alpha
Helix 29
AD2
E
140 145Right-handed alpha
Helix 30
AD3
E
150 156Right-handed alpha
Helix 31
AD4
E
158 174Right-handed alpha
Helix 32
AD5
E
182 185Right-handed 310
Helix 33
AD6
E
186 195Right-handed alpha
Helix 34
AD7
E
203 208Right-handed 310
Helix 35
AD8
E
214 256Right-handed alpha
Helix 36
AD9
E
263 292Right-handed alpha
Helix 37
AE1
E
297 680Right-handed alpha
Helix 38
AE2
F
56 1007Right-handed alpha
Helix 39
AE3
F
1012 1023Right-handed alpha
Helix 40
AE4
F
1040 1054Right-handed alpha
Helix 41
AE5
F
1056 1067Right-handed alpha
Helix 42
AE6
F
1078 1100Right-handed alpha
Helix 43
AE7
F
1107 1113Right-handed alpha
Helix 44
AE8
F
1115 1137Right-handed alpha
Helix 45
AE9
F
1140 1449Right-handed alpha
Helix 46
AF1
G
10 22Right-handed alpha
Helix 47
AF2
G
23 168Right-handed alpha
Helix 48
AF3
G
202 210Right-handed alpha
Helix 49
AF4
H
3 5Right-handed 310
Helix 50
AF5
H
6 25Right-handed alpha
Helix 51
AF6
H
138 146Right-handed alpha
Helix 52
AF7
H
189 200Right-handed alpha
Helix 53
AF8
H
205 220Right-handed alpha
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There are 4 sheets in PDB entry 8V11. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
178 179first strand
Strand 2
C
192 193anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
147 151first strand
Strand 2
D
159 163anti-parallel
Strand 3
D
169 173anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
G
171 173first strand
Strand 2
G
178 180anti-parallel
Strand 3
G
192 193anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
147 151first strand
Strand 2
H
159 163anti-parallel
Strand 3
H
169 173anti-parallel
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