Analysis of interatomic Contacts of Structural Units in PDB entry:
8V12


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8V12 entry

There is 1 chain in PDB entry 8V12 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 3HIS 1470
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 49 helices in PDB entry 8V12. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
3 35Right-handed alpha
Helix 2
AA2
A
35 52Right-handed alpha
Helix 3
AA3
A
53 57Right-handed 310
Helix 4
AA4
A
62 67Right-handed alpha
Helix 5
AA5
A
71 85Right-handed alpha
Helix 6
AA6
A
103 120Right-handed alpha
Helix 7
AA7
A
125 127Right-handed 310
Helix 8
AA8
A
141 162Right-handed alpha
Helix 9
AA9
A
294 299Right-handed alpha
Helix 10
AB1
A
310 314Right-handed 310
Helix 11
AB2
A
320 325Right-handed alpha
Helix 12
AB3
A
326 329Right-handed 310
Helix 13
AB4
A
333 337Right-handed 310
Helix 14
AB5
A
338 345Right-handed alpha
Helix 15
AB6
A
350 353Right-handed 310
Helix 16
AB7
A
355 359Right-handed 310
Helix 17
AB8
A
364 368Right-handed 310
Helix 18
AB9
A
369 373Right-handed 310
Helix 19
AC1
A
398 402Right-handed alpha
Helix 20
AC2
A
435 452Right-handed alpha
Helix 21
AC3
A
455 460Right-handed alpha
Helix 22
AC4
A
480 491Right-handed alpha
Helix 23
AC5
A
493 516Right-handed alpha
Helix 24
AC6
A
524 550Right-handed alpha
Helix 25
AC7
A
554 558Right-handed 310
Helix 26
AC8
A
559 582Right-handed alpha
Helix 27
AC9
A
587 619Right-handed alpha
Helix 28
AD1
A
622 660Right-handed alpha
Helix 29
AD2
A
663 673Right-handed alpha
Helix 30
AD3
A
722 736Right-handed alpha
Helix 31
AD4
A
1057 1067Right-handed alpha
Helix 32
AD5
A
1067 1074Right-handed alpha
Helix 33
AD6
A
1074 1099Right-handed alpha
Helix 34
AD7
A
1113 1126Right-handed alpha
Helix 35
AD8
A
1139 1150Right-handed alpha
Helix 36
AD9
A
1184 1201Right-handed alpha
Helix 37
AE1
A
1209 1218Right-handed alpha
Helix 38
AE2
A
1220 1224Right-handed 310
Helix 39
AE3
A
1226 1240Right-handed alpha
Helix 40
AE4
A
1241 1247Right-handed alpha
Helix 41
AE5
A
1272 1287Right-handed alpha
Helix 42
AE6
A
1289 1293Right-handed 310
Helix 43
AE7
A
1302 1333Right-handed alpha
Helix 44
AE8
A
1337 1362Right-handed alpha
Helix 45
AE9
A
1367 1395Right-handed alpha
Helix 46
AF1
A
1399 1428Right-handed alpha
Helix 47
AF2
A
1429 1431Right-handed 310
Helix 48
AF3
A
1434 1457Right-handed alpha
Helix 49
AF4
A
1457 1467Right-handed alpha
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There are 6 sheets in PDB entry 8V12. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
88 92first strand
Strand 2
A
426 430anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
95 96first strand
Strand 2
A
420 423anti-parallel
Strand 3
A
403 406anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
121 123first strand
Strand 2
A
346 348anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
303 304first strand
Strand 2
A
1251 1254anti-parallel
Strand 3
A
1260 1267anti-parallel
Strand 4
A
1204 1207anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
303 304first strand
Strand 2
A
1251 1254anti-parallel
Strand 3
A
1260 1267anti-parallel
Strand 4
A
1131 1138anti-parallel
Strand 5
A
1297 1299anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
388 390first strand
Strand 2
A
395 397anti-parallel
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