Analysis of interatomic Contacts of Structural Units in PDB entry:
8V1K


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8V1K entry

There are 2 chains in PDB entry 8V1K (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 24PHE 208
B
 ASP 24PHE 208
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 8 helices in PDB entry 8V1K. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
24 35Right-handed alpha
Helix 2
AA2
A
111 116Right-handed alpha
Helix 3
AA3
A
121 127Right-handed alpha
Helix 4
AA4
A
188 193Right-handed 310
Helix 5
AA5
B
25 35Right-handed alpha
Helix 6
AA6
B
111 116Right-handed alpha
Helix 7
AA7
B
121 127Right-handed alpha
Helix 8
AA8
B
189 193Right-handed 310
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There are 3 sheets in PDB entry 8V1K. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 12 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
128 133first strand
Strand 2
A
137 142anti-parallel
Strand 3
A
148 155anti-parallel
Strand 4
A
161 168anti-parallel
Strand 5
A
172 183anti-parallel
Strand 6
A
38 49anti-parallel
Strand 7
A
54 65anti-parallel
Strand 8
A
69 76anti-parallel
Strand 9
A
80 84anti-parallel
Strand 10
A
88 93anti-parallel
Strand 11
A
98 103anti-parallel
Strand 12
A
201 204parallel
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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
128 133first strand
Strand 2
A
137 142anti-parallel
Strand 3
A
148 155anti-parallel
Strand 4
A
161 168anti-parallel
Strand 5
A
172 183anti-parallel
Strand 6
A
38 49anti-parallel
Strand 7
A
54 65anti-parallel
Strand 8
B
186 187anti-parallel
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There are 12 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
128 133first strand
Strand 2
B
137 142anti-parallel
Strand 3
B
148 155anti-parallel
Strand 4
B
161 168anti-parallel
Strand 5
B
172 183anti-parallel
Strand 6
B
38 49anti-parallel
Strand 7
B
55 65anti-parallel
Strand 8
B
69 76anti-parallel
Strand 9
B
80 84anti-parallel
Strand 10
B
88 93anti-parallel
Strand 11
B
98 103anti-parallel
Strand 12
B
201 204parallel
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