Analysis of interatomic Contacts of Structural Units in PDB entry:
8V1Q

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8V1Q entry

There are 4 chains in PDB entry 8V1Q (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLY 60	ALA 1235
B	GLY 28	CYS 321
P	G -26	T -2
T	C -3	C 26

There are 51 helices in PDB entry 8V1Q. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	81	83	Right-handed 310
Helix 2	AA2	A	88	92	Right-handed 310
Helix 3	AA3	A	168	176	Right-handed alpha
Helix 4	AA4	A	209	217	Right-handed alpha
Helix 5	AA5	A	220	234	Right-handed alpha
Helix 6	AA6	A	275	286	Right-handed alpha
Helix 7	AA7	A	298	307	Right-handed alpha
Helix 8	AA8	A	321	325	Right-handed 310
Helix 9	AA9	A	331	335	Right-handed 310
Helix 10	AB1	A	346	348	Right-handed 310
Helix 11	AB2	A	420	430	Right-handed alpha
Helix 12	AB3	A	442	457	Right-handed alpha
Helix 13	AB4	A	470	482	Right-handed alpha
Helix 14	AB5	A	486	490	Right-handed 310
Helix 15	AB6	A	525	533	Right-handed alpha
Helix 16	AB7	A	539	548	Right-handed alpha
Helix 17	AB8	A	556	558	Right-handed 310
Helix 18	AB9	A	559	567	Right-handed alpha
Helix 19	AC1	A	567	593	Right-handed alpha
Helix 20	AC2	A	593	606	Right-handed alpha
Helix 21	AC3	A	608	615	Right-handed alpha
Helix 22	AC4	A	617	632	Right-handed alpha
Helix 23	AC5	A	639	644	Right-handed alpha
Helix 24	AC6	A	720	730	Right-handed alpha
Helix 25	AC7	A	739	744	Right-handed 310
Helix 26	AC8	A	772	792	Right-handed alpha
Helix 27	AC9	A	793	795	Right-handed 310
Helix 28	AD1	A	796	814	Right-handed alpha
Helix 29	AD2	A	816	822	Right-handed alpha
Helix 30	AD3	A	830	856	Right-handed alpha
Helix 31	AD4	A	858	866	Right-handed alpha
Helix 32	AD5	A	867	873	Right-handed 310
Helix 33	AD6	A	901	918	Right-handed alpha
Helix 34	AD7	A	963	980	Right-handed alpha
Helix 35	AD8	A	980	990	Right-handed alpha
Helix 36	AD9	A	991	993	Right-handed 310
Helix 37	AE1	A	994	998	Right-handed 310
Helix 38	AE2	A	1004	1006	Right-handed 310
Helix 39	AE3	A	1007	1022	Right-handed alpha
Helix 40	AE4	A	1027	1032	Right-handed 310
Helix 41	AE5	A	1049	1061	Right-handed alpha
Helix 42	AE6	A	1080	1096	Right-handed alpha
Helix 43	AE7	A	1145	1152	Right-handed alpha
Helix 44	AE8	A	1157	1174	Right-handed alpha
Helix 45	AE9	A	1180	1190	Right-handed alpha
Helix 46	AF1	A	1199	1209	Right-handed alpha
Helix 47	AF2	A	1219	1235	Right-handed alpha
Helix 48	AF3	B	39	47	Right-handed alpha
Helix 49	AF4	B	84	86	Right-handed 310
Helix 50	AF5	B	181	192	Right-handed alpha
Helix 51	AF6	B	273	281	Right-handed alpha

There are 14 sheets in PDB entry 8V1Q. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	74	79	first strand
Strand 2	A	94	99	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	104	107	first strand
Strand 2	A	110	113	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	129	130	first strand
Strand 2	A	133	134	anti-parallel

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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	328	329	first strand
Strand 2	A	341	345	anti-parallel
Strand 3	A	193	198	parallel
Strand 4	A	179	187	anti-parallel
Strand 5	A	146	157	anti-parallel
Strand 6	A	314	318	anti-parallel
Strand 7	A	350	351	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	206	208	first strand
Strand 2	A	266	270	anti-parallel
Strand 3	A	251	257	anti-parallel
Strand 4	A	634	635	parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	436	440	first strand
Strand 2	A	406	414	parallel
Strand 3	A	390	400	anti-parallel
Strand 4	A	363	372	anti-parallel
Strand 5	A	461	464	parallel
Strand 6	A	521	524	parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	499	502	first strand
Strand 2	A	514	517	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	707	709	first strand
Strand 2	A	924	937	anti-parallel
Strand 3	A	713	718	anti-parallel
Strand 4	A	889	895	anti-parallel
Strand 5	A	879	884	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	707	709	first strand
Strand 2	A	924	937	anti-parallel
Strand 3	A	940	945	anti-parallel
Strand 4	A	950	953	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	736	737	first strand
Strand 2	A	762	765	anti-parallel
Strand 3	A	752	755	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1033	1036	first strand
Strand 2	A	1071	1076	anti-parallel
Strand 3	A	1143	1144	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	88	90	first strand
Strand 2	B	31	35	anti-parallel
Strand 3	B	120	130	anti-parallel
Strand 4	B	133	142	anti-parallel
Strand 5	B	157	160	anti-parallel

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There are 13 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	96	99	first strand
Strand 2	B	58	61	anti-parallel
Strand 3	B	65	72	anti-parallel
Strand 4	B	75	82	anti-parallel
Strand 5	B	310	314	anti-parallel
Strand 6	B	298	303	anti-parallel
Strand 7	B	286	291	anti-parallel
Strand 8	B	176	179	anti-parallel
Strand 9	B	255	259	anti-parallel
Strand 10	B	218	224	parallel
Strand 11	B	209	213	anti-parallel
Strand 12	B	200	204	anti-parallel
Strand 13	B	265	269	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	101	102	first strand
Strand 2	B	106	107	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8V1Q

Analysis of interatomic Contacts of Structural Units in PDB entry:
8V1Q