Analysis of interatomic Contacts of Structural Units in PDB entry:
8V1R

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8V1R entry

There are 4 chains in PDB entry 8V1R (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLY 60	ALA 1235
B	GLY 28	CYS 321
P	G -26	T -2
T	C -3	C 26

There are 48 helices in PDB entry 8V1R. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	79	83	Right-handed 310
Helix 2	AA2	A	168	173	Right-handed alpha
Helix 3	AA3	A	174	176	Right-handed 310
Helix 4	AA4	A	209	216	Right-handed alpha
Helix 5	AA5	A	220	234	Right-handed alpha
Helix 6	AA6	A	276	285	Right-handed alpha
Helix 7	AA7	A	298	307	Right-handed alpha
Helix 8	AA8	A	331	335	Right-handed 310
Helix 9	AA9	A	420	431	Right-handed alpha
Helix 10	AB1	A	442	458	Right-handed alpha
Helix 11	AB2	A	470	482	Right-handed alpha
Helix 12	AB3	A	486	490	Right-handed 310
Helix 13	AB4	A	525	531	Right-handed alpha
Helix 14	AB5	A	539	549	Right-handed alpha
Helix 15	AB6	A	556	558	Right-handed 310
Helix 16	AB7	A	559	565	Right-handed alpha
Helix 17	AB8	A	567	593	Right-handed alpha
Helix 18	AB9	A	593	606	Right-handed alpha
Helix 19	AC1	A	608	615	Right-handed alpha
Helix 20	AC2	A	616	633	Right-handed alpha
Helix 21	AC3	A	639	643	Right-handed 310
Helix 22	AC4	A	720	729	Right-handed alpha
Helix 23	AC5	A	772	790	Right-handed alpha
Helix 24	AC6	A	796	822	Right-handed alpha
Helix 25	AC7	A	830	856	Right-handed alpha
Helix 26	AC8	A	858	866	Right-handed alpha
Helix 27	AC9	A	867	873	Right-handed 310
Helix 28	AD1	A	901	918	Right-handed alpha
Helix 29	AD2	A	963	979	Right-handed alpha
Helix 30	AD3	A	983	990	Right-handed alpha
Helix 31	AD4	A	991	993	Right-handed 310
Helix 32	AD5	A	994	1000	Right-handed 310
Helix 33	AD6	A	1007	1023	Right-handed alpha
Helix 34	AD7	A	1027	1032	Right-handed 310
Helix 35	AD8	A	1049	1061	Right-handed alpha
Helix 36	AD9	A	1080	1091	Right-handed alpha
Helix 37	AE1	A	1145	1152	Right-handed alpha
Helix 38	AE2	A	1157	1174	Right-handed alpha
Helix 39	AE3	A	1180	1190	Right-handed alpha
Helix 40	AE4	A	1202	1209	Right-handed alpha
Helix 41	AE5	A	1219	1235	Right-handed alpha
Helix 42	AE6	B	39	47	Right-handed alpha
Helix 43	AE7	B	52	56	Right-handed 310
Helix 44	AE8	B	82	86	Right-handed 310
Helix 45	AE9	B	101	105	Right-handed 310
Helix 46	AF1	B	109	113	Right-handed 310
Helix 47	AF2	B	181	192	Right-handed alpha
Helix 48	AF3	B	273	281	Right-handed alpha

There are 15 sheets in PDB entry 8V1R. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	74	75	first strand
Strand 2	A	98	99	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	104	105	first strand
Strand 2	A	112	113	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	129	130	first strand
Strand 2	A	133	134	anti-parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	341	346	first strand
Strand 2	A	193	199	parallel
Strand 3	A	179	187	anti-parallel
Strand 4	A	146	157	anti-parallel
Strand 5	A	314	318	anti-parallel
Strand 6	A	350	351	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	204	208	first strand
Strand 2	A	268	272	anti-parallel
Strand 3	A	250	253	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	256	257	first strand
Strand 2	A	634	635	parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	435	440	first strand
Strand 2	A	406	414	parallel
Strand 3	A	390	400	anti-parallel
Strand 4	A	363	372	anti-parallel
Strand 5	A	461	464	parallel
Strand 6	A	521	524	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	499	501	first strand
Strand 2	A	515	517	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	707	709	first strand
Strand 2	A	924	937	anti-parallel
Strand 3	A	713	718	anti-parallel
Strand 4	A	890	895	anti-parallel
Strand 5	A	879	885	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	707	709	first strand
Strand 2	A	924	937	anti-parallel
Strand 3	A	940	945	anti-parallel
Strand 4	A	950	953	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	736	737	first strand
Strand 2	A	760	765	anti-parallel
Strand 3	A	752	757	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	88	90	first strand
Strand 2	B	31	35	anti-parallel
Strand 3	B	120	127	anti-parallel
Strand 4	B	135	143	anti-parallel
Strand 5	B	149	150	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	88	90	first strand
Strand 2	B	31	35	anti-parallel
Strand 3	B	120	127	anti-parallel
Strand 4	B	135	143	anti-parallel
Strand 5	B	157	160	anti-parallel

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There are 11 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	96	99	first strand
Strand 2	B	58	62	anti-parallel
Strand 3	B	65	72	anti-parallel
Strand 4	B	75	81	anti-parallel
Strand 5	B	310	314	anti-parallel
Strand 6	B	298	303	anti-parallel
Strand 7	B	286	291	anti-parallel
Strand 8	B	176	179	anti-parallel
Strand 9	B	255	259	anti-parallel
Strand 10	B	217	224	parallel
Strand 11	B	210	214	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	203	204	first strand
Strand 2	B	265	266	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8V1R

Analysis of interatomic Contacts of Structural Units in PDB entry:
8V1R