Analysis of interatomic Contacts of Structural Units in PDB entry:
8V1S

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8V1S entry

There are 4 chains in PDB entry 8V1S (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLY 60	ALA 1235
B	GLY 28	LYS 319
P	G -26	C -1
T	A -6	C 26

There are 51 helices in PDB entry 8V1S. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	87	91	Right-handed 310
Helix 2	AA2	A	168	175	Right-handed alpha
Helix 3	AA3	A	209	214	Right-handed alpha
Helix 4	AA4	A	221	234	Right-handed alpha
Helix 5	AA5	A	244	248	Right-handed 310
Helix 6	AA6	A	275	285	Right-handed alpha
Helix 7	AA7	A	298	307	Right-handed alpha
Helix 8	AA8	A	331	335	Right-handed 310
Helix 9	AA9	A	346	350	Right-handed 310
Helix 10	AB1	A	420	430	Right-handed alpha
Helix 11	AB2	A	442	457	Right-handed alpha
Helix 12	AB3	A	470	482	Right-handed alpha
Helix 13	AB4	A	525	533	Right-handed alpha
Helix 14	AB5	A	539	548	Right-handed alpha
Helix 15	AB6	A	559	567	Right-handed alpha
Helix 16	AB7	A	567	593	Right-handed alpha
Helix 17	AB8	A	593	606	Right-handed alpha
Helix 18	AB9	A	608	615	Right-handed alpha
Helix 19	AC1	A	617	632	Right-handed alpha
Helix 20	AC2	A	699	703	Right-handed 310
Helix 21	AC3	A	720	729	Right-handed alpha
Helix 22	AC4	A	739	744	Right-handed 310
Helix 23	AC5	A	772	790	Right-handed alpha
Helix 24	AC6	A	796	816	Right-handed alpha
Helix 25	AC7	A	816	823	Right-handed alpha
Helix 26	AC8	A	830	855	Right-handed alpha
Helix 27	AC9	A	858	866	Right-handed alpha
Helix 28	AD1	A	867	870	Right-handed 310
Helix 29	AD2	A	901	917	Right-handed alpha
Helix 30	AD3	A	963	980	Right-handed alpha
Helix 31	AD4	A	983	990	Right-handed alpha
Helix 32	AD5	A	996	1001	Right-handed alpha
Helix 33	AD6	A	1004	1006	Right-handed 310
Helix 34	AD7	A	1007	1023	Right-handed alpha
Helix 35	AD8	A	1049	1059	Right-handed alpha
Helix 36	AD9	A	1082	1094	Right-handed alpha
Helix 37	AE1	A	1138	1142	Right-handed 310
Helix 38	AE2	A	1145	1152	Right-handed alpha
Helix 39	AE3	A	1157	1174	Right-handed alpha
Helix 40	AE4	A	1175	1178	Right-handed 310
Helix 41	AE5	A	1180	1189	Right-handed alpha
Helix 42	AE6	A	1190	1192	Right-handed 310
Helix 43	AE7	A	1199	1209	Right-handed alpha
Helix 44	AE8	A	1219	1235	Right-handed alpha
Helix 45	AE9	B	37	45	Right-handed alpha
Helix 46	AF1	B	101	105	Right-handed 310
Helix 47	AF2	B	109	113	Right-handed 310
Helix 48	AF3	B	130	133	Right-handed 310
Helix 49	AF4	B	145	147	Right-handed 310
Helix 50	AF5	B	181	192	Right-handed alpha
Helix 51	AF6	B	273	281	Right-handed alpha

There are 16 sheets in PDB entry 8V1S. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	73	74	first strand
Strand 2	A	99	100	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	77	79	first strand
Strand 2	A	94	96	anti-parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	110	113	first strand
Strand 2	A	104	107	anti-parallel
Strand 3	A	436	440	anti-parallel
Strand 4	A	406	414	parallel
Strand 5	A	390	400	anti-parallel
Strand 6	A	368	372	anti-parallel

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There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	110	113	first strand
Strand 2	A	104	107	anti-parallel
Strand 3	A	436	440	anti-parallel
Strand 4	A	406	414	parallel
Strand 5	A	390	400	anti-parallel
Strand 6	A	363	365	anti-parallel
Strand 7	A	461	462	parallel
Strand 8	A	521	522	parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	151	156	first strand
Strand 2	A	180	187	anti-parallel
Strand 3	A	193	198	anti-parallel
Strand 4	A	341	344	parallel
Strand 5	A	328	329	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	203	208	first strand
Strand 2	A	268	273	anti-parallel
Strand 3	A	250	253	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	316	317	first strand
Strand 2	A	351	352	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	499	502	first strand
Strand 2	A	514	517	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	708	709	first strand
Strand 2	A	928	935	anti-parallel
Strand 3	A	713	715	anti-parallel
Strand 4	A	889	893	anti-parallel
Strand 5	A	882	886	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	708	709	first strand
Strand 2	A	928	935	anti-parallel
Strand 3	A	941	945	anti-parallel
Strand 4	A	949	953	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	754	755	first strand
Strand 2	A	762	763	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1212	1215	first strand
Strand 2	B	166	169	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	88	90	first strand
Strand 2	B	32	36	anti-parallel
Strand 3	B	120	128	anti-parallel
Strand 4	B	135	144	anti-parallel
Strand 5	B	148	150	anti-parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	88	90	first strand
Strand 2	B	32	36	anti-parallel
Strand 3	B	120	128	anti-parallel
Strand 4	B	135	144	anti-parallel
Strand 5	B	157	160	anti-parallel

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There are 8 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	96	99	first strand
Strand 2	B	58	62	anti-parallel
Strand 3	B	65	72	anti-parallel
Strand 4	B	75	81	anti-parallel
Strand 5	B	310	314	anti-parallel
Strand 6	B	298	301	anti-parallel
Strand 7	B	287	291	anti-parallel
Strand 8	B	176	179	anti-parallel

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There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	255	257	first strand
Strand 2	B	218	224	parallel
Strand 3	B	209	213	anti-parallel
Strand 4	B	200	205	anti-parallel
Strand 5	B	265	269	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8V1S

Analysis of interatomic Contacts of Structural Units in PDB entry:
8V1S