Analysis of interatomic Contacts of Structural Units in PDB entry:
8V1Y

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8V1Y entry

There are 4 chains in PDB entry 8V1Y (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	VAL 469
B	MET 1	VAL 469
C	GLU 3	HIS 116
D	GLU 3	HIS 116

There are 44 helices in PDB entry 8V1Y. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	2	13	Right-handed alpha
Helix 2	AA2	A	37	39	Right-handed 310
Helix 3	AA3	A	40	47	Right-handed alpha
Helix 4	AA4	A	72	75	Right-handed 310
Helix 5	AA5	A	104	120	Right-handed alpha
Helix 6	AA6	A	157	162	Right-handed 310
Helix 7	AA7	A	189	203	Right-handed alpha
Helix 8	AA8	A	229	250	Right-handed alpha
Helix 9	AA9	A	287	291	Right-handed 310
Helix 10	AB1	A	292	305	Right-handed alpha
Helix 11	AB2	A	305	314	Right-handed alpha
Helix 12	AB3	A	317	323	Right-handed alpha
Helix 13	AB4	A	351	355	Right-handed 310
Helix 14	AB5	A	367	386	Right-handed alpha
Helix 15	AB6	A	414	425	Right-handed alpha
Helix 16	AB7	A	426	431	Right-handed alpha
Helix 17	AB8	A	432	434	Right-handed 310
Helix 18	AB9	A	436	457	Right-handed alpha
Helix 19	AC1	A	459	466	Right-handed alpha
Helix 20	AC2	B	2	13	Right-handed alpha
Helix 21	AC3	B	37	39	Right-handed 310
Helix 22	AC4	B	40	47	Right-handed alpha
Helix 23	AC5	B	72	75	Right-handed 310
Helix 24	AC6	B	104	120	Right-handed alpha
Helix 25	AC7	B	157	162	Right-handed 310
Helix 26	AC8	B	189	203	Right-handed alpha
Helix 27	AC9	B	229	250	Right-handed alpha
Helix 28	AD1	B	287	291	Right-handed 310
Helix 29	AD2	B	292	314	Right-handed alpha
Helix 30	AD3	B	317	321	Right-handed 310
Helix 31	AD4	B	351	355	Right-handed 310
Helix 32	AD5	B	367	386	Right-handed alpha
Helix 33	AD6	B	414	425	Right-handed alpha
Helix 34	AD7	B	430	434	Right-handed 310
Helix 35	AD8	B	436	457	Right-handed alpha
Helix 36	AD9	B	459	466	Right-handed alpha
Helix 37	AE1	C	5	12	Right-handed alpha
Helix 38	AE2	C	50	54	Right-handed 310
Helix 39	AE3	C	55	58	Right-handed 310
Helix 40	AE4	C	59	77	Right-handed alpha
Helix 41	AE5	C	90	94	Right-handed alpha
Helix 42	AE6	D	5	12	Right-handed alpha
Helix 43	AE7	D	50	54	Right-handed 310
Helix 44	AE8	D	58	77	Right-handed alpha

There are 13 sheets in PDB entry 8V1Y. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	29	35	first strand
Strand 2	A	17	23	anti-parallel
Strand 3	A	85	93	parallel
Strand 4	A	65	70	anti-parallel
Strand 5	A	48	51	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	29	35	first strand
Strand 2	A	17	23	anti-parallel
Strand 3	A	85	93	parallel
Strand 4	A	76	77	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	227	228	first strand
Strand 2	A	124	127	anti-parallel
Strand 3	A	271	277	anti-parallel
Strand 4	A	280	281	anti-parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	227	228	first strand
Strand 2	A	124	127	anti-parallel
Strand 3	A	271	277	anti-parallel
Strand 4	A	357	359	anti-parallel
Strand 5	A	342	345	anti-parallel
Strand 6	A	332	336	parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	207	212	first strand
Strand 2	A	219	224	anti-parallel
Strand 3	A	133	136	anti-parallel
Strand 4	A	253	255	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	138	144	first strand
Strand 2	A	147	153	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	29	35	first strand
Strand 2	B	17	23	anti-parallel
Strand 3	B	85	93	parallel
Strand 4	B	66	70	anti-parallel
Strand 5	B	48	50	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	29	35	first strand
Strand 2	B	17	23	anti-parallel
Strand 3	B	85	93	parallel
Strand 4	B	76	77	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	227	228	first strand
Strand 2	B	124	127	anti-parallel
Strand 3	B	271	277	anti-parallel
Strand 4	B	280	281	anti-parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	227	228	first strand
Strand 2	B	124	127	anti-parallel
Strand 3	B	271	277	anti-parallel
Strand 4	B	357	359	anti-parallel
Strand 5	B	342	345	anti-parallel
Strand 6	B	332	336	parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	207	212	first strand
Strand 2	B	219	224	anti-parallel
Strand 3	B	133	136	anti-parallel
Strand 4	B	253	255	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	138	144	first strand
Strand 2	B	147	153	anti-parallel

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There are 10 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	19	22	first strand
Strand 2	C	26	29	anti-parallel
Strand 3	C	38	44	anti-parallel
Strand 4	C	102	106	anti-parallel
Strand 5	C	83	89	anti-parallel
Strand 6	D	83	89	anti-parallel
Strand 7	D	102	106	anti-parallel
Strand 8	D	38	44	anti-parallel
Strand 9	D	26	30	anti-parallel
Strand 10	D	19	21	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8V1Y

Analysis of interatomic Contacts of Structural Units in PDB entry:
8V1Y