Analysis of interatomic Contacts of Structural Units in PDB entry:
8V24

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8V24 entry

There are 4 chains in PDB entry 8V24 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LYS 63	LEU 389
B	MET 1	SER 301
C	GLY 67	LEU 389
D	MET 1	ALA 302

There are 54 helices in PDB entry 8V24. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	69	83	Right-handed alpha
Helix 2	AA2	A	84	98	Right-handed alpha
Helix 3	AA3	A	102	121	Right-handed alpha
Helix 4	AA4	A	122	131	Right-handed alpha
Helix 5	AA5	A	139	154	Right-handed alpha
Helix 6	AA6	A	156	170	Right-handed alpha
Helix 7	AA7	A	176	192	Right-handed alpha
Helix 8	AA8	A	195	210	Right-handed alpha
Helix 9	AA9	A	213	228	Right-handed alpha
Helix 10	AB1	A	229	239	Right-handed alpha
Helix 11	AB2	A	239	244	Right-handed alpha
Helix 12	AB3	A	248	263	Right-handed alpha
Helix 13	AB4	A	264	278	Right-handed alpha
Helix 14	AB5	A	281	297	Right-handed alpha
Helix 15	AB6	A	299	301	Right-handed 310
Helix 16	AB7	A	302	312	Right-handed alpha
Helix 17	AB8	A	314	328	Right-handed alpha
Helix 18	AB9	A	332	341	Right-handed alpha
Helix 19	AC1	A	344	348	Right-handed 310
Helix 20	AC2	B	53	55	Right-handed 310
Helix 21	AC3	B	79	88	Right-handed alpha
Helix 22	AC4	B	108	119	Right-handed alpha
Helix 23	AC5	B	178	186	Right-handed alpha
Helix 24	AC6	B	197	204	Right-handed alpha
Helix 25	AC7	B	211	215	Right-handed 310
Helix 26	AC8	B	233	248	Right-handed alpha
Helix 27	AC9	B	249	251	Right-handed 310
Helix 28	AD1	B	264	278	Right-handed alpha
Helix 29	AD2	C	68	72	Right-handed alpha
Helix 30	AD3	C	74	83	Right-handed alpha
Helix 31	AD4	C	84	98	Right-handed alpha
Helix 32	AD5	C	102	121	Right-handed alpha
Helix 33	AD6	C	122	131	Right-handed alpha
Helix 34	AD7	C	139	154	Right-handed alpha
Helix 35	AD8	C	156	170	Right-handed alpha
Helix 36	AD9	C	172	174	Right-handed 310
Helix 37	AE1	C	175	191	Right-handed alpha
Helix 38	AE2	C	195	210	Right-handed alpha
Helix 39	AE3	C	213	228	Right-handed alpha
Helix 40	AE4	C	229	238	Right-handed alpha
Helix 41	AE5	C	238	244	Right-handed alpha
Helix 42	AE6	C	247	261	Right-handed alpha
Helix 43	AE7	C	264	278	Right-handed alpha
Helix 44	AE8	C	281	312	Right-handed alpha
Helix 45	AE9	C	314	328	Right-handed alpha
Helix 46	AF1	C	332	352	Right-handed alpha
Helix 47	AF2	D	77	88	Right-handed alpha
Helix 48	AF3	D	108	119	Right-handed alpha
Helix 49	AF4	D	178	186	Right-handed alpha
Helix 50	AF5	D	198	205	Right-handed alpha
Helix 51	AF6	D	211	215	Right-handed 310
Helix 52	AF7	D	233	248	Right-handed alpha
Helix 53	AF8	D	249	251	Right-handed 310
Helix 54	AF9	D	264	278	Right-handed alpha

There are 13 sheets in PDB entry 8V24. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	363	364	first strand
Strand 2	A	355	357	anti-parallel
Strand 3	A	380	382	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	11	16	first strand
Strand 2	B	23	30	anti-parallel
Strand 3	B	92	96	anti-parallel
Strand 4	B	38	41	parallel
Strand 5	B	48	51	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	57	59	first strand
Strand 2	B	65	67	anti-parallel
Strand 3	B	73	74	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	136	139	first strand
Strand 2	B	144	148	anti-parallel
Strand 3	B	254	261	anti-parallel
Strand 4	B	153	158	parallel
Strand 5	B	172	176	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	136	139	first strand
Strand 2	B	144	148	anti-parallel
Strand 3	B	254	261	anti-parallel
Strand 4	B	128	132	parallel
Strand 5	B	282	286	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	192	194	first strand
Strand 2	B	216	218	parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	363	364	first strand
Strand 2	C	355	357	anti-parallel
Strand 3	C	380	382	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	5	7	first strand
Strand 2	D	120	122	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	11	16	first strand
Strand 2	D	23	30	anti-parallel
Strand 3	D	92	96	anti-parallel
Strand 4	D	38	41	parallel
Strand 5	D	48	51	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	57	59	first strand
Strand 2	D	65	67	anti-parallel
Strand 3	D	73	74	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	136	139	first strand
Strand 2	D	144	148	anti-parallel
Strand 3	D	254	261	anti-parallel
Strand 4	D	153	158	parallel
Strand 5	D	172	176	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	136	139	first strand
Strand 2	D	144	148	anti-parallel
Strand 3	D	254	261	anti-parallel
Strand 4	D	129	132	parallel
Strand 5	D	282	285	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	193	194	first strand
Strand 2	D	217	218	parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8V24

Analysis of interatomic Contacts of Structural Units in PDB entry:
8V24