Analysis of interatomic Contacts of Structural Units in PDB entry:
8V29

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8V29 entry

There are 3 chains in PDB entry 8V29 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 26	PRO 216
B	PRO 27	LYS 612
C	HIS 51	GLU 831

There are 22 helices in PDB entry 8V29. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	34	50	Right-handed alpha
Helix 2	AA2	A	51	63	Right-handed alpha
Helix 3	AA3	A	67	72	Right-handed alpha
Helix 4	AA4	A	83	90	Right-handed alpha
Helix 5	AA5	A	92	117	Right-handed alpha
Helix 6	AA6	A	119	127	Right-handed alpha
Helix 7	AA7	A	130	158	Right-handed alpha
Helix 8	AA8	A	183	212	Right-handed alpha
Helix 9	AA9	B	51	59	Right-handed alpha
Helix 10	AB1	B	61	65	Right-handed 310
Helix 11	AB2	B	75	77	Right-handed 310
Helix 12	AB3	B	215	218	Right-handed 310
Helix 13	AB4	B	247	251	Right-handed 310
Helix 14	AB5	B	273	277	Right-handed 310
Helix 15	AB6	B	355	360	Right-handed alpha
Helix 16	AB7	B	543	548	Right-handed alpha
Helix 17	AB8	C	160	164	Right-handed 310
Helix 18	AB9	C	210	214	Right-handed 310
Helix 19	AC1	C	362	366	Right-handed 310
Helix 20	AC2	C	388	392	Right-handed 310
Helix 21	AC3	C	560	565	Right-handed alpha
Helix 22	AC4	C	748	753	Right-handed alpha

There are 30 sheets in PDB entry 8V29. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	29	32	first strand
Strand 2	B	44	50	anti-parallel
Strand 3	B	86	91	anti-parallel
Strand 4	B	79	83	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	66	68	first strand
Strand 2	B	101	106	anti-parallel
Strand 3	B	112	118	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	181	183	first strand
Strand 2	B	142	145	anti-parallel
Strand 3	B	133	137	anti-parallel
Strand 4	B	220	221	parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	168	171	first strand
Strand 2	B	157	163	anti-parallel
Strand 3	B	194	202	anti-parallel
Strand 4	B	205	208	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	168	171	first strand
Strand 2	B	157	163	anti-parallel
Strand 3	B	194	202	anti-parallel
Strand 4	B	212	214	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	226	231	first strand
Strand 2	B	240	245	anti-parallel
Strand 3	B	283	286	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	270	271	first strand
Strand 2	B	255	263	anti-parallel
Strand 3	B	294	303	anti-parallel
Strand 4	B	317	320	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	332	336	first strand
Strand 2	B	345	351	anti-parallel
Strand 3	B	386	391	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	377	382	first strand
Strand 2	B	365	372	anti-parallel
Strand 3	B	396	403	anti-parallel
Strand 4	B	414	416	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	428	434	first strand
Strand 2	B	439	444	anti-parallel
Strand 3	B	479	481	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	469	474	first strand
Strand 2	B	452	459	anti-parallel
Strand 3	B	491	499	anti-parallel
Strand 4	B	508	513	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	525	530	first strand
Strand 2	B	535	539	anti-parallel
Strand 3	B	576	579	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	566	571	first strand
Strand 2	B	553	560	anti-parallel
Strand 3	B	587	595	anti-parallel
Strand 4	B	600	602	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	566	571	first strand
Strand 2	B	553	560	anti-parallel
Strand 3	B	587	595	anti-parallel
Strand 4	B	606	609	anti-parallel

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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	97	101	first strand
Strand 2	C	62	67	anti-parallel
Strand 3	C	53	57	anti-parallel
Strand 4	C	133	134	parallel
Strand 5	C	232	233	parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	78	79	first strand
Strand 2	C	108	115	anti-parallel
Strand 3	C	82	84	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	78	79	first strand
Strand 2	C	108	115	anti-parallel
Strand 3	C	121	127	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	141	147	first strand
Strand 2	C	152	158	anti-parallel
Strand 3	C	200	206	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	186	193	first strand
Strand 2	C	169	178	anti-parallel
Strand 3	C	216	225	anti-parallel
Strand 4	C	242	244	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	254	255	first strand
Strand 2	C	267	271	anti-parallel
Strand 3	C	297	301	anti-parallel
Strand 4	C	290	291	anti-parallel

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There are 5 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	260	262	first strand
Strand 2	C	322	330	parallel
Strand 3	C	312	318	anti-parallel
Strand 4	C	277	282	anti-parallel
Strand 5	C	285	287	anti-parallel

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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	337	343	first strand
Strand 2	C	348	354	anti-parallel
Strand 3	C	394	398	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	379	381	first strand
Strand 2	C	368	373	anti-parallel
Strand 3	C	405	413	anti-parallel
Strand 4	C	418	426	anti-parallel

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There are 3 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	437	445	first strand
Strand 2	C	448	458	anti-parallel
Strand 3	C	488	497	anti-parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	478	485	first strand
Strand 2	C	463	472	anti-parallel
Strand 3	C	504	513	anti-parallel
Strand 4	C	526	529	anti-parallel

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There are 3 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	541	545	first strand
Strand 2	C	551	556	anti-parallel
Strand 3	C	593	597	anti-parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	584	588	first strand
Strand 2	C	570	576	anti-parallel
Strand 3	C	604	610	anti-parallel
Strand 4	C	619	622	anti-parallel

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There are 7 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	673	678	first strand
Strand 2	C	656	663	anti-parallel
Strand 3	C	697	704	anti-parallel
Strand 4	C	709	718	anti-parallel
Strand 5	C	633	639	parallel
Strand 6	C	642	646	anti-parallel
Strand 7	C	683	686	anti-parallel

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There are 3 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	730	735	first strand
Strand 2	C	740	744	anti-parallel
Strand 3	C	795	798	anti-parallel

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There are 4 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	783	788	first strand
Strand 2	C	756	764	anti-parallel
Strand 3	C	806	815	anti-parallel
Strand 4	C	818	828	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8V29

Analysis of interatomic Contacts of Structural Units in PDB entry:
8V29