Analysis of interatomic Contacts of Structural Units in PDB entry:
8V2A


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8V2A entry

There are 3 chains in PDB entry 8V2A (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 26PRO 216
B
 PRO 125GLU 323
C
 THR 252VAL 431
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 8V2A. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
34 50Right-handed alpha
Helix 2
AA2
A
51 63Right-handed alpha
Helix 3
AA3
A
67 73Right-handed alpha
Helix 4
AA4
A
83 90Right-handed alpha
Helix 5
AA5
A
93 117Right-handed alpha
Helix 6
AA6
A
119 127Right-handed alpha
Helix 7
AA7
A
130 158Right-handed alpha
Helix 8
AA8
A
183 212Right-handed alpha
Helix 9
AA9
B
215 218Right-handed 310
Helix 10
AB1
B
247 252Right-handed 310
Helix 11
AB2
B
273 278Right-handed 310
Helix 12
AB3
C
428 430Right-handed 310
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There are 10 sheets in PDB entry 8V2A. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
181 183first strand
Strand 2
B
142 145anti-parallel
Strand 3
B
133 137anti-parallel
Strand 4
B
220 221parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
168 171first strand
Strand 2
B
157 163anti-parallel
Strand 3
B
194 202anti-parallel
Strand 4
B
205 208anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
168 171first strand
Strand 2
B
157 163anti-parallel
Strand 3
B
194 202anti-parallel
Strand 4
B
212 214anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
226 231first strand
Strand 2
B
240 245anti-parallel
Strand 3
B
283 286anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
270 271first strand
Strand 2
B
255 263anti-parallel
Strand 3
B
294 303anti-parallel
Strand 4
B
317 320anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
254 255first strand
Strand 2
C
267 271anti-parallel
Strand 3
C
297 301anti-parallel
Strand 4
C
290 291anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
259 262first strand
Strand 2
C
327 330parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
285 287first strand
Strand 2
C
279 282anti-parallel
Strand 3
C
314 317anti-parallel
Strand 4
C
322 324anti-parallel
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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
337 343first strand
Strand 2
C
348 354anti-parallel
Strand 3
C
393 398anti-parallel
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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
379 381first strand
Strand 2
C
368 373anti-parallel
Strand 3
C
405 414anti-parallel
Strand 4
C
417 426anti-parallel
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