Analysis of interatomic Contacts of Structural Units in PDB entry:
8V2B

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8V2B entry

There are 3 chains in PDB entry 8V2B (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 24	THR 202
B	PRO 27	PRO 609
C	PRO 29	PRO 731

There are 13 helices in PDB entry 8V2B. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	32	47	Right-handed alpha
Helix 2	AA2	A	52	60	Right-handed alpha
Helix 3	AA3	A	64	74	Right-handed alpha
Helix 4	AA4	A	80	87	Right-handed alpha
Helix 5	AA5	A	88	115	Right-handed alpha
Helix 6	AA6	A	121	144	Right-handed alpha
Helix 7	AA7	A	169	201	Right-handed alpha
Helix 8	AA8	B	51	59	Right-handed alpha
Helix 9	AA9	B	213	216	Right-handed 310
Helix 10	AB1	B	245	250	Right-handed alpha
Helix 11	AB2	B	271	276	Right-handed 310
Helix 12	AB3	B	541	546	Right-handed alpha
Helix 13	AB4	C	454	459	Right-handed alpha

There are 29 sheets in PDB entry 8V2B. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	31	32	first strand
Strand 2	B	43	48	anti-parallel
Strand 3	B	86	92	anti-parallel
Strand 4	B	79	83	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	37	38	first strand
Strand 2	B	112	122	parallel
Strand 3	B	99	106	anti-parallel
Strand 4	B	65	69	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	180	181	first strand
Strand 2	B	142	147	anti-parallel
Strand 3	B	130	137	anti-parallel
Strand 4	B	218	219	parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	172	173	first strand
Strand 2	B	157	163	anti-parallel
Strand 3	B	192	199	anti-parallel
Strand 4	B	204	206	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	172	173	first strand
Strand 2	B	157	163	anti-parallel
Strand 3	B	192	199	anti-parallel
Strand 4	B	210	212	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	224	229	first strand
Strand 2	B	238	243	anti-parallel
Strand 3	B	281	284	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	268	269	first strand
Strand 2	B	253	260	anti-parallel
Strand 3	B	292	301	anti-parallel
Strand 4	B	315	318	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	330	334	first strand
Strand 2	B	343	349	anti-parallel
Strand 3	B	384	389	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	376	380	first strand
Strand 2	B	363	369	anti-parallel
Strand 3	B	394	401	anti-parallel
Strand 4	B	410	414	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	426	433	first strand
Strand 2	B	436	442	anti-parallel
Strand 3	B	477	479	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	467	472	first strand
Strand 2	B	450	457	anti-parallel
Strand 3	B	490	497	anti-parallel
Strand 4	B	506	510	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	523	524	first strand
Strand 2	B	533	537	anti-parallel
Strand 3	B	575	577	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	564	569	first strand
Strand 2	B	551	558	anti-parallel
Strand 3	B	586	594	anti-parallel
Strand 4	B	597	606	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	35	42	first strand
Strand 2	C	47	53	anti-parallel
Strand 3	C	94	99	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	78	89	first strand
Strand 2	C	61	72	anti-parallel
Strand 3	C	109	117	anti-parallel
Strand 4	C	135	137	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	148	151	first strand
Strand 2	C	163	169	anti-parallel
Strand 3	C	194	199	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	156	158	first strand
Strand 2	C	223	231	parallel
Strand 3	C	210	218	anti-parallel
Strand 4	C	174	178	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	249	253	first strand
Strand 2	C	290	294	anti-parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	271	274	first strand
Strand 2	C	303	310	anti-parallel
Strand 3	C	315	322	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	334	340	first strand
Strand 2	C	346	351	anti-parallel

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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	372	375	first strand
Strand 2	C	361	369	anti-parallel
Strand 3	C	378	380	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	372	375	first strand
Strand 2	C	361	369	anti-parallel
Strand 3	C	396	405	anti-parallel
Strand 4	C	416	421	anti-parallel

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There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	433	440	first strand
Strand 2	C	443	450	anti-parallel
Strand 3	C	489	494	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	478	484	first strand
Strand 2	C	464	471	anti-parallel
Strand 3	C	499	506	anti-parallel
Strand 4	C	515	518	anti-parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	530	534	first strand
Strand 2	C	607	616	parallel
Strand 3	C	593	602	anti-parallel
Strand 4	C	560	561	anti-parallel

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There are 5 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	530	534	first strand
Strand 2	C	607	616	parallel
Strand 3	C	593	602	anti-parallel
Strand 4	C	551	558	anti-parallel
Strand 5	C	570	573	anti-parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	542	543	first strand
Strand 2	C	580	581	anti-parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	638	641	first strand
Strand 2	C	695	698	anti-parallel

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There are 5 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	673	677	first strand
Strand 2	C	681	689	anti-parallel
Strand 3	C	656	663	anti-parallel
Strand 4	C	705	714	anti-parallel
Strand 5	C	726	730	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8V2B

Analysis of interatomic Contacts of Structural Units in PDB entry:
8V2B