Analysis of interatomic Contacts of Structural Units in PDB entry:
8V2J


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8V2J entry

There are 4 chains in PDB entry 8V2J (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 MET 1THR 429
E
 MET 1THR 429
A
 MET 1GLU 441
D
 MET 1GLU 441
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 77 helices in PDB entry 8V2J. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
B
10 29Right-handed alpha
Helix 2
AA2
B
40 46Right-handed alpha
Helix 3
AA3
B
47 49Right-handed 310
Helix 4
AA4
B
55 57Right-handed 310
Helix 5
AA5
B
70 79Right-handed alpha
Helix 6
AA6
B
100 106Right-handed alpha
Helix 7
AA7
B
106 127Right-handed alpha
Helix 8
AA8
B
141 159Right-handed alpha
Helix 9
AA9
B
180 196Right-handed alpha
Helix 10
AB1
B
203 214Right-handed alpha
Helix 11
AB2
B
221 237Right-handed alpha
Helix 12
AB3
B
237 242Right-handed alpha
Helix 13
AB4
B
249 258Right-handed alpha
Helix 14
AB5
B
277 282Right-handed alpha
Helix 15
AB6
B
285 295Right-handed alpha
Helix 16
AB7
B
296 299Right-handed 310
Helix 17
AB8
B
304 308Right-handed 310
Helix 18
AB9
B
322 337Right-handed alpha
Helix 19
AC1
B
338 341Right-handed 310
Helix 20
AC2
B
373 392Right-handed alpha
Helix 21
AC3
B
394 401Right-handed alpha
Helix 22
AC4
B
404 428Right-handed alpha
Helix 23
AC5
E
10 28Right-handed alpha
Helix 24
AC6
E
40 46Right-handed alpha
Helix 25
AC7
E
47 49Right-handed 310
Helix 26
AC8
E
70 79Right-handed alpha
Helix 27
AC9
E
86 88Right-handed 310
Helix 28
AD1
E
100 106Right-handed alpha
Helix 29
AD2
E
108 127Right-handed alpha
Helix 30
AD3
E
141 159Right-handed alpha
Helix 31
AD4
E
180 196Right-handed alpha
Helix 32
AD5
E
204 214Right-handed alpha
Helix 33
AD6
E
221 237Right-handed alpha
Helix 34
AD7
E
237 242Right-handed alpha
Helix 35
AD8
E
249 258Right-handed alpha
Helix 36
AD9
E
277 282Right-handed alpha
Helix 37
AE1
E
285 295Right-handed alpha
Helix 38
AE2
E
324 337Right-handed alpha
Helix 39
AE3
E
338 341Right-handed 310
Helix 40
AE4
E
373 391Right-handed alpha
Helix 41
AE5
E
394 401Right-handed alpha
Helix 42
AE6
E
404 428Right-handed alpha
Helix 43
AE7
A
10 29Right-handed alpha
Helix 44
AE8
A
44 51Right-handed alpha
Helix 45
AE9
A
72 81Right-handed alpha
Helix 46
AF1
A
102 108Right-handed alpha
Helix 47
AF2
A
108 129Right-handed alpha
Helix 48
AF3
A
143 162Right-handed alpha
Helix 49
AF4
A
182 198Right-handed alpha
Helix 50
AF5
A
205 216Right-handed alpha
Helix 51
AF6
A
223 244Right-handed alpha
Helix 52
AF7
A
251 260Right-handed alpha
Helix 53
AF8
A
277 282Right-handed alpha
Helix 54
AF9
A
287 296Right-handed alpha
Helix 55
AG1
A
306 310Right-handed 310
Helix 56
AG2
A
324 338Right-handed alpha
Helix 57
AG3
A
383 400Right-handed alpha
Helix 58
AG4
A
404 411Right-handed alpha
Helix 59
AG5
A
414 436Right-handed alpha
Helix 60
AG6
D
10 29Right-handed alpha
Helix 61
AG7
D
44 51Right-handed alpha
Helix 62
AG8
D
72 81Right-handed alpha
Helix 63
AG9
D
82 85Right-handed 310
Helix 64
AH1
D
102 108Right-handed alpha
Helix 65
AH2
D
110 128Right-handed alpha
Helix 66
AH3
D
143 161Right-handed alpha
Helix 67
AH4
D
182 198Right-handed alpha
Helix 68
AH5
D
205 216Right-handed alpha
Helix 69
AH6
D
223 244Right-handed alpha
Helix 70
AH7
D
251 260Right-handed alpha
Helix 71
AH8
D
277 282Right-handed alpha
Helix 72
AH9
D
287 297Right-handed alpha
Helix 73
AI1
D
306 310Right-handed 310
Helix 74
AI2
D
324 338Right-handed alpha
Helix 75
AI3
D
383 401Right-handed alpha
Helix 76
AI4
D
404 411Right-handed alpha
Helix 77
AI5
D
414 436Right-handed alpha
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There are 10 sheets in PDB entry 8V2J. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 10 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
90 92first strand
Strand 2
B
63 67parallel
Strand 3
B
3 9parallel
Strand 4
B
130 138parallel
Strand 5
B
165 169parallel
Strand 6
B
198 202parallel
Strand 7
B
265 271parallel
Strand 8
B
363 371anti-parallel
Strand 9
B
310 319anti-parallel
Strand 10
B
349 354parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
51 53first strand
Strand 2
B
59 61anti-parallel
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There are 10 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
90 92first strand
Strand 2
E
63 67parallel
Strand 3
E
3 9parallel
Strand 4
E
130 138parallel
Strand 5
E
164 170parallel
Strand 6
E
198 203parallel
Strand 7
E
265 271parallel
Strand 8
E
363 369anti-parallel
Strand 9
E
313 319anti-parallel
Strand 10
E
349 354parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
51 53first strand
Strand 2
E
59 61anti-parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
93 94first strand
Strand 2
A
65 69parallel
Strand 3
A
2 9parallel
Strand 4
A
131 140parallel
Strand 5
A
165 171parallel
Strand 6
A
200 204parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
53 55first strand
Strand 2
A
61 63anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
272 273first strand
Strand 2
A
373 381anti-parallel
Strand 3
A
312 321anti-parallel
Strand 4
A
351 356parallel
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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
92 94first strand
Strand 2
D
65 69parallel
Strand 3
D
3 9parallel
Strand 4
D
132 140parallel
Strand 5
D
165 171parallel
Strand 6
D
200 204parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
53 55first strand
Strand 2
D
61 63anti-parallel
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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
272 273first strand
Strand 2
D
373 381anti-parallel
Strand 3
D
312 321anti-parallel
Strand 4
D
351 356parallel
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