Analysis of interatomic Contacts of Structural Units in PDB entry:
8V2K

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8V2K entry

There are 3 chains in PDB entry 8V2K (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 2	ILE 466
B	ALA 2	ILE 466
C	ALA 2	GLY 336

There are 95 helices in PDB entry 8V2K. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	21	32	Right-handed alpha
Helix 2	AA2	A	35	39	Right-handed 310
Helix 3	AA3	A	40	44	Right-handed 310
Helix 4	AA4	A	59	67	Right-handed alpha
Helix 5	AA5	A	75	90	Right-handed alpha
Helix 6	AA6	A	99	116	Right-handed alpha
Helix 7	AA7	A	132	142	Right-handed alpha
Helix 8	AA8	A	151	156	Right-handed 310
Helix 9	AA9	A	168	180	Right-handed alpha
Helix 10	AB1	A	202	216	Right-handed alpha
Helix 11	AB2	A	226	238	Right-handed alpha
Helix 12	AB3	A	239	242	Right-handed 310
Helix 13	AB4	A	245	254	Right-handed alpha
Helix 14	AB5	A	255	257	Right-handed 310
Helix 15	AB6	A	281	296	Right-handed alpha
Helix 16	AB7	A	305	319	Right-handed alpha
Helix 17	AB8	A	321	342	Right-handed alpha
Helix 18	AB9	A	367	370	Right-handed 310
Helix 19	AC1	A	371	385	Right-handed alpha
Helix 20	AC2	A	392	397	Right-handed alpha
Helix 21	AC3	A	423	436	Right-handed alpha
Helix 22	AC4	A	437	442	Right-handed 310
Helix 23	AC5	A	456	461	Right-handed alpha
Helix 24	AC6	B	21	32	Right-handed alpha
Helix 25	AC7	B	35	39	Right-handed 310
Helix 26	AC8	B	40	44	Right-handed 310
Helix 27	AC9	B	59	67	Right-handed alpha
Helix 28	AD1	B	75	90	Right-handed alpha
Helix 29	AD2	B	99	116	Right-handed alpha
Helix 30	AD3	B	117	120	Right-handed 310
Helix 31	AD4	B	132	142	Right-handed alpha
Helix 32	AD5	B	151	156	Right-handed 310
Helix 33	AD6	B	168	180	Right-handed alpha
Helix 34	AD7	B	202	216	Right-handed alpha
Helix 35	AD8	B	226	238	Right-handed alpha
Helix 36	AD9	B	239	242	Right-handed 310
Helix 37	AE1	B	245	254	Right-handed alpha
Helix 38	AE2	B	255	257	Right-handed 310
Helix 39	AE3	B	281	296	Right-handed alpha
Helix 40	AE4	B	305	319	Right-handed alpha
Helix 41	AE5	B	321	342	Right-handed alpha
Helix 42	AE6	B	359	363	Right-handed alpha
Helix 43	AE7	B	367	370	Right-handed 310
Helix 44	AE8	B	371	385	Right-handed alpha
Helix 45	AE9	B	423	436	Right-handed alpha
Helix 46	AF1	B	437	443	Right-handed alpha
Helix 47	AF2	B	456	461	Right-handed alpha
Helix 48	AF3	C	21	32	Right-handed alpha
Helix 49	AF4	C	35	39	Right-handed 310
Helix 50	AF5	C	40	44	Right-handed 310
Helix 51	AF6	C	59	67	Right-handed alpha
Helix 52	AF7	C	75	90	Right-handed alpha
Helix 53	AF8	C	99	116	Right-handed alpha
Helix 54	AF9	C	132	142	Right-handed alpha
Helix 55	AG1	C	151	156	Right-handed 310
Helix 56	AG2	C	168	180	Right-handed alpha
Helix 57	AG3	C	202	216	Right-handed alpha
Helix 58	AG4	C	226	238	Right-handed alpha
Helix 59	AG5	C	239	242	Right-handed 310
Helix 60	AG6	C	245	254	Right-handed alpha
Helix 61	AG7	C	255	257	Right-handed 310
Helix 62	AG8	C	281	296	Right-handed alpha
Helix 63	AG9	C	305	320	Right-handed alpha
Helix 64	AH1	C	321	342	Right-handed alpha
Helix 65	AH2	C	359	363	Right-handed alpha
Helix 66	AH3	C	367	370	Right-handed 310
Helix 67	AH4	C	371	385	Right-handed alpha
Helix 68	AH5	C	392	397	Right-handed alpha
Helix 69	AH6	C	423	436	Right-handed alpha
Helix 70	AH7	C	437	438	Right-handed 310
Helix 71	AH8	C	439	444	Right-handed 310
Helix 72	AH9	C	456	461	Right-handed alpha
Helix 73	AI1	D	21	32	Right-handed alpha
Helix 74	AI2	D	35	39	Right-handed 310
Helix 75	AI3	D	40	44	Right-handed 310
Helix 76	AI4	D	59	67	Right-handed alpha
Helix 77	AI5	D	75	90	Right-handed alpha
Helix 78	AI6	D	99	116	Right-handed alpha
Helix 79	AI7	D	117	120	Right-handed 310
Helix 80	AI8	D	132	142	Right-handed alpha
Helix 81	AI9	D	151	156	Right-handed 310
Helix 82	AJ1	D	168	180	Right-handed alpha
Helix 83	AJ2	D	202	216	Right-handed alpha
Helix 84	AJ3	D	226	238	Right-handed alpha
Helix 85	AJ4	D	239	242	Right-handed 310
Helix 86	AJ5	D	245	254	Right-handed alpha
Helix 87	AJ6	D	255	257	Right-handed 310
Helix 88	AJ7	D	281	296	Right-handed alpha
Helix 89	AJ8	D	305	319	Right-handed alpha
Helix 90	AJ9	D	321	342	Right-handed alpha
Helix 91	AK1	D	359	363	Right-handed alpha
Helix 92	AK2	D	367	370	Right-handed 310
Helix 93	AK3	D	371	385	Right-handed alpha
Helix 94	AK4	D	423	436	Right-handed alpha
Helix 95	AK5	D	440	444	Right-handed 310

There are 15 sheets in PDB entry 8V2K. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	57	58	first strand
Strand 2	C	9	16	parallel
Strand 3	A	9	16	anti-parallel
Strand 4	C	57	58	parallel

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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	93	97	first strand
Strand 2	A	274	278	anti-parallel
Strand 3	A	259	263	anti-parallel
Strand 4	A	219	223	parallel
Strand 5	A	184	190	parallel
Strand 6	A	125	128	parallel
Strand 7	A	145	148	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	354	358	first strand
Strand 2	A	412	416	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	447	451	first strand
Strand 2	A	462	465	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	57	58	first strand
Strand 2	D	9	16	parallel
Strand 3	B	9	16	anti-parallel
Strand 4	D	57	58	parallel

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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	93	97	first strand
Strand 2	B	274	278	anti-parallel
Strand 3	B	259	263	anti-parallel
Strand 4	B	220	223	parallel
Strand 5	B	184	190	parallel
Strand 6	B	125	128	parallel
Strand 7	B	145	148	parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	354	358	first strand
Strand 2	B	412	416	anti-parallel
Strand 3	B	389	391	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	447	451	first strand
Strand 2	B	462	465	anti-parallel

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There are 7 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	93	97	first strand
Strand 2	C	274	278	anti-parallel
Strand 3	C	259	263	anti-parallel
Strand 4	C	220	223	parallel
Strand 5	C	184	190	parallel
Strand 6	C	125	128	parallel
Strand 7	C	145	148	parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	354	358	first strand
Strand 2	C	412	416	anti-parallel
Strand 3	C	389	391	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	398	399	first strand
Strand 2	C	404	405	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	447	451	first strand
Strand 2	C	462	465	anti-parallel

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There are 7 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	93	97	first strand
Strand 2	D	274	278	anti-parallel
Strand 3	D	259	263	anti-parallel
Strand 4	D	219	223	parallel
Strand 5	D	184	190	parallel
Strand 6	D	125	128	parallel
Strand 7	D	145	148	parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	354	358	first strand
Strand 2	D	412	416	anti-parallel
Strand 3	D	389	391	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	447	451	first strand
Strand 2	D	462	465	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8V2K

Analysis of interatomic Contacts of Structural Units in PDB entry:
8V2K