Analysis of interatomic Contacts of Structural Units in PDB entry:
8V2Y


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8V2Y entry

There are 2 chains in PDB entry 8V2Y (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA -6THR 160
B
 ALA -6THR 160
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 8V2Y. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
12 26Right-handed alpha
Helix 2
AA2
A
36 42Right-handed alpha
Helix 3
AA3
A
59 65Right-handed alpha
Helix 4
AA4
A
65 71Right-handed alpha
Helix 5
AA5
A
95 108Right-handed alpha
Helix 6
AA6
A
144 160Right-handed alpha
Helix 7
AA7
B
12 26Right-handed alpha
Helix 8
AA8
B
36 42Right-handed alpha
Helix 9
AA9
B
59 65Right-handed alpha
Helix 10
AB1
B
66 71Right-handed alpha
Helix 11
AB2
B
95 109Right-handed alpha
Helix 12
AB3
B
144 160Right-handed alpha
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There are 5 sheets in PDB entry 8V2Y. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
28 31first strand
Strand 2
A
3 7parallel
Strand 3
A
45 53parallel
Strand 4
A
78 84parallel
Strand 5
A
111 112parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
57 58first strand
Strand 2
A
45 53anti-parallel
Strand 3
A
78 84parallel
Strand 4
A
137 139parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
116 117first strand
Strand 2
A
133 134anti-parallel
Strand 3
A
129 130anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
28 31first strand
Strand 2
B
3 7parallel
Strand 3
B
45 51parallel
Strand 4
B
78 84parallel
Strand 5
B
111 112parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
28 31first strand
Strand 2
B
3 7parallel
Strand 3
B
45 51parallel
Strand 4
B
78 84parallel
Strand 5
B
137 139parallel
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