Analysis of interatomic Contacts of Structural Units in PDB entry:
8V31


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8V31 entry

There are 2 chains in PDB entry 8V31 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 41ASP 290
C
 ALA 40ASP 290
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 10 helices in PDB entry 8V31. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
53 57Right-handed 310
Helix 2
AA2
A
157 161Right-handed 310
Helix 3
AA3
A
174 179Right-handed alpha
Helix 4
AA4
A
234 243Right-handed alpha
Helix 5
AA5
A
251 260Right-handed alpha
Helix 6
AA6
C
102 106Right-handed 310
Helix 7
AA7
C
157 161Right-handed 310
Helix 8
AA8
C
173 178Right-handed 310
Helix 9
AA9
C
234 244Right-handed alpha
Helix 10
AB1
C
251 260Right-handed alpha
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There are 8 sheets in PDB entry 8V31. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
44 46first strand
Strand 2
A
145 149anti-parallel
Strand 3
A
152 155anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
65 66first strand
Strand 2
A
279 288anti-parallel
Strand 3
A
94 97anti-parallel
Strand 4
A
88 91anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
65 66first strand
Strand 2
A
279 288anti-parallel
Strand 3
A
122 130anti-parallel
Strand 4
A
207 214anti-parallel
Strand 5
A
217 222anti-parallel
Strand 6
A
225 231anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
76 78first strand
Strand 2
A
113 115anti-parallel
Strand 3
A
269 272anti-parallel
Strand 4
A
135 142anti-parallel
Strand 5
A
164 168anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
45 47first strand
Strand 2
C
144 149anti-parallel
Strand 3
C
152 155anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
65 66first strand
Strand 2
C
279 288anti-parallel
Strand 3
C
94 97anti-parallel
Strand 4
C
88 91anti-parallel
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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
65 66first strand
Strand 2
C
279 288anti-parallel
Strand 3
C
122 130anti-parallel
Strand 4
C
207 214anti-parallel
Strand 5
C
217 222anti-parallel
Strand 6
C
225 231anti-parallel
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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
76 78first strand
Strand 2
C
113 115anti-parallel
Strand 3
C
269 272anti-parallel
Strand 4
C
135 142anti-parallel
Strand 5
C
164 168anti-parallel
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