Analysis of interatomic Contacts of Structural Units in PDB entry:
8V34

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8V34 entry

There are 8 chains in PDB entry 8V34 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
B	LYS 5	GLU 169
A	LYS 3	GLN 168
C	LYS 3	GLU 169
D	LYS 5	GLN 168
E	LYS 5	GLN 168
F	ILE 8	GLN 168
G	GLN 6	GLN 168
H	LYS 5	TYR 89

There are 42 helices in PDB entry 8V34. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	B	66	70	Right-handed 310
Helix 2	AA2	B	94	103	Right-handed alpha
Helix 3	AA3	B	105	114	Right-handed alpha
Helix 4	AA4	B	118	128	Right-handed alpha
Helix 5	AA5	B	129	131	Right-handed 310
Helix 6	AA6	A	66	70	Right-handed 310
Helix 7	AA7	A	94	102	Right-handed alpha
Helix 8	AA8	A	105	113	Right-handed alpha
Helix 9	AA9	A	119	129	Right-handed alpha
Helix 10	AB1	C	66	69	Right-handed 310
Helix 11	AB2	C	94	104	Right-handed alpha
Helix 12	AB3	C	106	116	Right-handed alpha
Helix 13	AB4	C	118	129	Right-handed alpha
Helix 14	AB5	D	66	70	Right-handed 310
Helix 15	AB6	D	94	101	Right-handed alpha
Helix 16	AB7	D	105	114	Right-handed alpha
Helix 17	AB8	D	118	129	Right-handed alpha
Helix 18	AB9	E	66	70	Right-handed 310
Helix 19	AC1	E	94	102	Right-handed alpha
Helix 20	AC2	E	105	113	Right-handed alpha
Helix 21	AC3	E	119	129	Right-handed alpha
Helix 22	AC4	F	66	70	Right-handed 310
Helix 23	AC5	F	95	102	Right-handed alpha
Helix 24	AC6	F	105	113	Right-handed alpha
Helix 25	AC7	F	119	129	Right-handed alpha
Helix 26	AC8	G	66	70	Right-handed 310
Helix 27	AC9	G	94	101	Right-handed alpha
Helix 28	AD1	G	105	115	Right-handed alpha
Helix 29	AD2	G	118	128	Right-handed alpha
Helix 30	AD3	G	129	131	Right-handed 310
Helix 31	AD4	H	66	70	Right-handed 310
Helix 32	AD5	H	94	103	Right-handed alpha
Helix 33	AD6	H	105	114	Right-handed alpha
Helix 34	AD7	H	121	129	Right-handed alpha
Helix 35	AD8	I	66	69	Right-handed 310
Helix 36	AD9	I	94	102	Right-handed alpha
Helix 37	AE1	I	105	114	Right-handed alpha
Helix 38	AE2	I	121	128	Right-handed alpha
Helix 39	AE3	I	129	131	Right-handed 310
Helix 40	AE4	J	66	70	Right-handed 310
Helix 41	AE5	J	94	100	Right-handed alpha
Helix 42	AE6	J	121	129	Right-handed alpha

There are 13 sheets in PDB entry 8V34. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4,

There are 17 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	46	48	first strand
Strand 2	B	35	40	anti-parallel
Strand 3	B	77	84	anti-parallel
Strand 4	B	88	93	anti-parallel
Strand 5	B	8	16	parallel
Strand 6	B	19	26	anti-parallel
Strand 7	B	58	64	anti-parallel
Strand 8	B	51	55	anti-parallel
Strand 9	A	51	55	parallel
Strand 10	A	58	64	anti-parallel
Strand 11	A	19	27	anti-parallel
Strand 12	A	7	16	anti-parallel
Strand 13	A	88	93	parallel
Strand 14	A	76	84	anti-parallel
Strand 15	A	158	165	anti-parallel
Strand 16	A	143	151	anti-parallel
Strand 17	A	132	136	anti-parallel

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There are 18 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	46	48	first strand
Strand 2	A	35	40	anti-parallel
Strand 3	A	76	84	anti-parallel
Strand 4	A	88	93	anti-parallel
Strand 5	A	7	16	parallel
Strand 6	A	19	27	anti-parallel
Strand 7	A	58	64	anti-parallel
Strand 8	A	51	55	anti-parallel
Strand 9	B	51	55	parallel
Strand 10	B	58	64	anti-parallel
Strand 11	B	19	26	anti-parallel
Strand 12	B	8	16	anti-parallel
Strand 13	B	88	93	parallel
Strand 14	B	77	84	anti-parallel
Strand 15	B	158	165	anti-parallel
Strand 16	B	143	151	anti-parallel
Strand 17	B	132	136	anti-parallel
Strand 18	H	72	73	anti-parallel

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There are 18 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	72	73	first strand
Strand 2	D	132	136	anti-parallel
Strand 3	D	143	151	anti-parallel
Strand 4	D	158	165	anti-parallel
Strand 5	D	76	84	anti-parallel
Strand 6	D	88	93	anti-parallel
Strand 7	D	8	16	parallel
Strand 8	D	19	26	anti-parallel
Strand 9	D	58	64	anti-parallel
Strand 10	D	51	55	anti-parallel
Strand 11	H	51	55	parallel
Strand 12	H	58	64	anti-parallel
Strand 13	H	19	27	anti-parallel
Strand 14	H	7	16	anti-parallel
Strand 15	H	88	93	parallel
Strand 16	H	76	84	anti-parallel
Strand 17	H	35	40	anti-parallel
Strand 18	H	46	48	anti-parallel

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There are 17 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	46	48	first strand
Strand 2	D	35	40	anti-parallel
Strand 3	D	76	84	anti-parallel
Strand 4	D	88	93	anti-parallel
Strand 5	D	8	16	parallel
Strand 6	D	19	26	anti-parallel
Strand 7	D	58	64	anti-parallel
Strand 8	D	51	55	anti-parallel
Strand 9	H	51	55	parallel
Strand 10	H	58	64	anti-parallel
Strand 11	H	19	27	anti-parallel
Strand 12	H	7	16	anti-parallel
Strand 13	H	88	93	parallel
Strand 14	H	76	84	anti-parallel
Strand 15	H	158	165	anti-parallel
Strand 16	H	143	151	anti-parallel
Strand 17	H	132	136	anti-parallel

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There are 16 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	46	48	first strand
Strand 2	C	35	40	anti-parallel
Strand 3	C	77	84	anti-parallel
Strand 4	C	88	93	anti-parallel
Strand 5	C	8	16	parallel
Strand 6	C	19	26	anti-parallel
Strand 7	C	58	64	anti-parallel
Strand 8	C	51	55	anti-parallel
Strand 9	G	51	55	parallel
Strand 10	G	58	64	anti-parallel
Strand 11	G	19	26	anti-parallel
Strand 12	G	8	16	anti-parallel
Strand 13	G	88	93	parallel
Strand 14	G	76	84	anti-parallel
Strand 15	G	35	40	anti-parallel
Strand 16	G	46	48	anti-parallel

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There are 19 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	132	136	first strand
Strand 2	C	143	151	anti-parallel
Strand 3	C	158	165	anti-parallel
Strand 4	C	77	84	anti-parallel
Strand 5	C	88	93	anti-parallel
Strand 6	C	8	16	parallel
Strand 7	C	19	26	anti-parallel
Strand 8	C	58	64	anti-parallel
Strand 9	C	51	55	anti-parallel
Strand 10	G	51	55	parallel
Strand 11	G	58	64	anti-parallel
Strand 12	G	19	26	anti-parallel
Strand 13	G	8	16	anti-parallel
Strand 14	G	88	93	parallel
Strand 15	G	76	84	anti-parallel
Strand 16	G	158	165	anti-parallel
Strand 17	G	143	151	anti-parallel
Strand 18	G	132	136	anti-parallel
Strand 19	I	72	73	anti-parallel

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There are 18 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	72	73	first strand
Strand 2	E	132	136	anti-parallel
Strand 3	E	143	151	anti-parallel
Strand 4	E	158	165	anti-parallel
Strand 5	E	76	84	anti-parallel
Strand 6	E	88	93	anti-parallel
Strand 7	E	7	16	parallel
Strand 8	E	19	27	anti-parallel
Strand 9	E	58	64	anti-parallel
Strand 10	E	51	55	anti-parallel
Strand 11	I	51	55	parallel
Strand 12	I	58	64	anti-parallel
Strand 13	I	19	26	anti-parallel
Strand 14	I	8	16	anti-parallel
Strand 15	I	88	93	parallel
Strand 16	I	78	84	anti-parallel
Strand 17	I	35	40	anti-parallel
Strand 18	I	46	48	anti-parallel

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There are 17 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	46	48	first strand
Strand 2	E	35	40	anti-parallel
Strand 3	E	76	84	anti-parallel
Strand 4	E	88	93	anti-parallel
Strand 5	E	7	16	parallel
Strand 6	E	19	27	anti-parallel
Strand 7	E	58	64	anti-parallel
Strand 8	E	51	55	anti-parallel
Strand 9	I	51	55	parallel
Strand 10	I	58	64	anti-parallel
Strand 11	I	19	26	anti-parallel
Strand 12	I	8	16	anti-parallel
Strand 13	I	88	93	parallel
Strand 14	I	78	84	anti-parallel
Strand 15	I	158	165	anti-parallel
Strand 16	I	143	151	anti-parallel
Strand 17	I	132	136	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	51	55	first strand
Strand 2	F	58	64	anti-parallel
Strand 3	F	19	25	anti-parallel
Strand 4	F	9	16	anti-parallel
Strand 5	F	92	93	parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	46	48	first strand
Strand 2	F	36	40	anti-parallel
Strand 3	F	76	83	anti-parallel
Strand 4	F	89	90	anti-parallel

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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	46	48	first strand
Strand 2	F	36	40	anti-parallel
Strand 3	F	76	83	anti-parallel
Strand 4	F	158	165	anti-parallel
Strand 5	F	144	151	anti-parallel
Strand 6	F	132	135	anti-parallel

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There are 8 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	46	48	first strand
Strand 2	J	36	40	anti-parallel
Strand 3	J	77	84	anti-parallel
Strand 4	J	88	93	anti-parallel
Strand 5	J	8	16	parallel
Strand 6	J	19	26	anti-parallel
Strand 7	J	59	64	anti-parallel
Strand 8	J	51	53	anti-parallel

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There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	46	48	first strand
Strand 2	J	36	40	anti-parallel
Strand 3	J	77	84	anti-parallel
Strand 4	J	158	165	anti-parallel
Strand 5	J	143	151	anti-parallel
Strand 6	J	132	136	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8V34

Analysis of interatomic Contacts of Structural Units in PDB entry:
8V34