Analysis of interatomic Contacts of Structural Units in PDB entry:
8V38

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8V38 entry

There are 2 chains in PDB entry 8V38 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 42	VAL 819
B	ALA 42	VAL 819

There are 38 helices in PDB entry 8V38. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	303	316	Right-handed alpha
Helix 2	AA2	A	318	329	Right-handed alpha
Helix 3	AA3	A	330	334	Right-handed 310
Helix 4	AA4	A	443	444	Right-handed 310
Helix 5	AA5	A	445	453	Right-handed alpha
Helix 6	AA6	A	458	474	Right-handed alpha
Helix 7	AA7	A	500	502	Right-handed 310
Helix 8	AA8	A	503	508	Right-handed alpha
Helix 9	AA9	A	510	529	Right-handed alpha
Helix 10	AB1	A	550	560	Right-handed alpha
Helix 11	AB2	A	576	584	Right-handed alpha
Helix 12	AB3	A	599	619	Right-handed alpha
Helix 13	AB4	A	627	648	Right-handed alpha
Helix 14	AB5	A	682	705	Right-handed alpha
Helix 15	AB6	A	711	724	Right-handed alpha
Helix 16	AB7	A	740	753	Right-handed alpha
Helix 17	AB8	A	755	763	Right-handed alpha
Helix 18	AB9	A	783	788	Right-handed alpha
Helix 19	AC1	A	796	812	Right-handed alpha
Helix 20	AC2	B	303	316	Right-handed alpha
Helix 21	AC3	B	318	329	Right-handed alpha
Helix 22	AC4	B	330	334	Right-handed 310
Helix 23	AC5	B	443	444	Right-handed 310
Helix 24	AC6	B	445	453	Right-handed alpha
Helix 25	AC7	B	458	474	Right-handed alpha
Helix 26	AC8	B	500	502	Right-handed 310
Helix 27	AC9	B	503	508	Right-handed alpha
Helix 28	AD1	B	510	529	Right-handed alpha
Helix 29	AD2	B	550	560	Right-handed alpha
Helix 30	AD3	B	576	584	Right-handed alpha
Helix 31	AD4	B	599	619	Right-handed alpha
Helix 32	AD5	B	627	648	Right-handed alpha
Helix 33	AD6	B	682	705	Right-handed alpha
Helix 34	AD7	B	711	724	Right-handed alpha
Helix 35	AD8	B	740	753	Right-handed alpha
Helix 36	AD9	B	755	763	Right-handed alpha
Helix 37	AE1	B	783	788	Right-handed alpha
Helix 38	AE2	B	796	812	Right-handed alpha

There are 10 sheets in PDB entry 8V38. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	51	56	first strand
Strand 2	A	157	165	anti-parallel
Strand 3	A	78	84	anti-parallel
Strand 4	A	124	128	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	62	69	first strand
Strand 2	A	142	151	anti-parallel
Strand 3	A	93	98	anti-parallel
Strand 4	A	103	107	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	110	111	first strand
Strand 2	A	121	122	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	187	192	first strand
Strand 2	A	257	264	anti-parallel
Strand 3	A	213	219	anti-parallel
Strand 4	A	236	240	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	243	249	first strand
Strand 2	A	199	205	anti-parallel
Strand 3	A	295	299	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	51	56	first strand
Strand 2	B	157	165	anti-parallel
Strand 3	B	78	84	anti-parallel
Strand 4	B	124	128	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	62	69	first strand
Strand 2	B	142	151	anti-parallel
Strand 3	B	93	98	anti-parallel
Strand 4	B	103	107	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	110	111	first strand
Strand 2	B	121	122	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	187	192	first strand
Strand 2	B	257	264	anti-parallel
Strand 3	B	213	219	anti-parallel
Strand 4	B	236	240	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	243	249	first strand
Strand 2	B	199	205	anti-parallel
Strand 3	B	295	299	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8V38

Analysis of interatomic Contacts of Structural Units in PDB entry:
8V38