Analysis of interatomic Contacts of Structural Units in PDB entry:
8V3J

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8V3J entry

There are 4 chains in PDB entry 8V3J (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PHE 1	LYS 300
B	PHE 1	LYS 300
C	PHE 1	LYS 300
D	ASN 19	LYS 300

There are 5 helices in PDB entry 8V3J. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	66	69	Right-handed 310
Helix 2	AA2	B	66	69	Right-handed 310
Helix 3	AA3	C	66	69	Right-handed 310
Helix 4	AA4	D	37	41	Right-handed 310
Helix 5	AA5	D	65	69	Right-handed 310

There are 27 sheets in PDB entry 8V3J. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	10	11	first strand
Strand 2	A	2	5	anti-parallel
Strand 3	A	42	45	anti-parallel
Strand 4	A	101	102	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	17	22	first strand
Strand 2	A	142	150	parallel
Strand 3	A	125	135	anti-parallel
Strand 4	A	63	64	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	17	22	first strand
Strand 2	A	142	150	parallel
Strand 3	A	125	135	anti-parallel
Strand 4	A	54	58	anti-parallel
Strand 5	A	93	95	anti-parallel

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There are 10 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	27	28	first strand
Strand 2	A	33	37	anti-parallel
Strand 3	A	105	109	anti-parallel
Strand 4	A	73	77	anti-parallel
Strand 5	A	80	84	anti-parallel
Strand 6	C	167	171	parallel
Strand 7	C	289	297	parallel
Strand 8	C	266	278	anti-parallel
Strand 9	C	191	198	anti-parallel
Strand 10	C	238	243	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	117	120	first strand
Strand 2	A	154	157	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	161	163	first strand
Strand 2	A	184	187	anti-parallel
Strand 3	A	248	249	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	167	171	first strand
Strand 2	A	289	297	parallel
Strand 3	A	266	278	anti-parallel
Strand 4	A	191	198	anti-parallel
Strand 5	A	238	243	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	178	180	first strand
Strand 2	A	253	258	anti-parallel
Strand 3	A	221	227	anti-parallel
Strand 4	A	230	231	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	10	11	first strand
Strand 2	B	2	5	anti-parallel
Strand 3	B	42	45	anti-parallel
Strand 4	B	101	102	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	17	22	first strand
Strand 2	B	142	150	parallel
Strand 3	B	125	135	anti-parallel
Strand 4	B	63	64	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	17	22	first strand
Strand 2	B	142	150	parallel
Strand 3	B	125	135	anti-parallel
Strand 4	B	54	58	anti-parallel
Strand 5	B	93	95	anti-parallel

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There are 10 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	27	28	first strand
Strand 2	B	33	37	anti-parallel
Strand 3	B	105	109	anti-parallel
Strand 4	B	73	77	anti-parallel
Strand 5	B	80	84	anti-parallel
Strand 6	D	167	171	parallel
Strand 7	D	289	297	parallel
Strand 8	D	266	278	anti-parallel
Strand 9	D	191	198	anti-parallel
Strand 10	D	238	243	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	117	120	first strand
Strand 2	B	154	157	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	161	163	first strand
Strand 2	B	184	187	anti-parallel
Strand 3	B	248	249	anti-parallel

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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	167	171	first strand
Strand 2	B	289	297	parallel
Strand 3	B	266	278	anti-parallel
Strand 4	B	191	198	anti-parallel
Strand 5	B	238	243	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	178	180	first strand
Strand 2	B	252	258	anti-parallel
Strand 3	B	221	227	anti-parallel
Strand 4	B	230	231	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	10	11	first strand
Strand 2	C	2	5	anti-parallel
Strand 3	C	42	45	anti-parallel
Strand 4	C	101	102	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	17	22	first strand
Strand 2	C	142	150	parallel
Strand 3	C	125	135	anti-parallel
Strand 4	C	63	64	anti-parallel

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There are 5 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	17	22	first strand
Strand 2	C	142	150	parallel
Strand 3	C	125	135	anti-parallel
Strand 4	C	54	58	anti-parallel
Strand 5	C	93	95	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	33	37	first strand
Strand 2	C	105	109	anti-parallel
Strand 3	C	73	77	anti-parallel
Strand 4	C	80	84	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	117	120	first strand
Strand 2	C	154	157	anti-parallel

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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	161	163	first strand
Strand 2	C	184	187	anti-parallel
Strand 3	C	248	249	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	178	180	first strand
Strand 2	C	253	258	anti-parallel
Strand 3	C	221	227	anti-parallel
Strand 4	C	230	231	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	27	28	first strand
Strand 2	D	33	34	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	117	119	first strand
Strand 2	D	155	157	anti-parallel

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There are 3 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	161	163	first strand
Strand 2	D	184	187	anti-parallel
Strand 3	D	248	249	anti-parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	178	180	first strand
Strand 2	D	253	258	anti-parallel
Strand 3	D	221	227	anti-parallel
Strand 4	D	230	231	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8V3J

Analysis of interatomic Contacts of Structural Units in PDB entry:
8V3J