Analysis of interatomic Contacts of Structural Units in PDB entry:
8V3M


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8V3M entry

There is 1 chain in PDB entry 8V3M (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 2ARG 601
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 15 helices in PDB entry 8V3M. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
98 104Right-handed alpha
Helix 2
AA2
A
160 175Right-handed alpha
Helix 3
AA3
A
184 187Right-handed 310
Helix 4
AA4
A
255 270Right-handed alpha
Helix 5
AA5
A
274 283Right-handed alpha
Helix 6
AA6
A
293 299Right-handed alpha
Helix 7
AA7
A
310 314Right-handed 310
Helix 8
AA8
A
323 340Right-handed alpha
Helix 9
AA9
A
451 469Right-handed alpha
Helix 10
AB1
A
473 477Right-handed 310
Helix 11
AB2
A
481 486Right-handed alpha
Helix 12
AB3
A
494 497Right-handed 310
Helix 13
AB4
A
498 508Right-handed alpha
Helix 14
AB5
A
551 571Right-handed alpha
Helix 15
AB6
A
585 599Right-handed alpha
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There are 4 sheets in PDB entry 8V3M. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
3 5first strand
Strand 2
A
8 11anti-parallel
Strand 3
A
76 80anti-parallel
Strand 4
A
150 154anti-parallel
Strand 5
A
109 113anti-parallel
Strand 6
A
116 121anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
21 26first strand
Strand 2
A
52 57anti-parallel
Strand 3
A
87 92parallel
Strand 4
A
135 142anti-parallel
Strand 5
A
127 130anti-parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
189 198first strand
Strand 2
A
204 212anti-parallel
Strand 3
A
284 289anti-parallel
Strand 4
A
243 248parallel
Strand 5
A
427 436parallel
Strand 6
A
512 518parallel
Strand 7
A
442 446anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
216 220first strand
Strand 2
A
237 239anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il