Analysis of interatomic Contacts of Structural Units in PDB entry:
8V3S


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8V3S entry

There are 2 chains in PDB entry 8V3S (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 1GLY 602
M
 UNK 1UNK 5
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 14 helices in PDB entry 8V3S. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
98 104Right-handed alpha
Helix 2
AA2
A
160 175Right-handed alpha
Helix 3
AA3
A
256 270Right-handed alpha
Helix 4
AA4
A
274 283Right-handed alpha
Helix 5
AA5
A
293 299Right-handed alpha
Helix 6
AA6
A
310 314Right-handed 310
Helix 7
AA7
A
323 340Right-handed alpha
Helix 8
AA8
A
451 467Right-handed alpha
Helix 9
AA9
A
481 486Right-handed alpha
Helix 10
AB1
A
494 497Right-handed 310
Helix 11
AB2
A
498 508Right-handed alpha
Helix 12
AB3
A
551 570Right-handed alpha
Helix 13
AB4
A
577 581Right-handed 310
Helix 14
AB5
A
585 601Right-handed alpha
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There are 5 sheets in PDB entry 8V3S. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2 5first strand
Strand 2
A
8 11anti-parallel
Strand 3
A
76 80anti-parallel
Strand 4
A
151 154anti-parallel
Strand 5
A
109 112anti-parallel
Strand 6
A
116 121anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
21 23first strand
Strand 2
A
52 57anti-parallel
Strand 3
A
87 92parallel
Strand 4
A
140 142anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
127 128first strand
Strand 2
A
137 138anti-parallel
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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
189 198first strand
Strand 2
A
204 212anti-parallel
Strand 3
A
285 289anti-parallel
Strand 4
A
244 249parallel
Strand 5
A
429 436parallel
Strand 6
A
512 518parallel
Strand 7
A
442 446anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
216 220first strand
Strand 2
A
237 239anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il