Analysis of interatomic Contacts of Structural Units in PDB entry:
8V3U

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8V3U entry

There are 4 chains in PDB entry 8V3U (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 375	LEU 775
B	SER 375	LEU 775
C	SER 375	LEU 775
D	SER 375	LEU 775

There are 72 helices in PDB entry 8V3U. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	375	393	Right-handed alpha
Helix 2	AA2	A	396	405	Right-handed alpha
Helix 3	AA3	A	417	431	Right-handed alpha
Helix 4	AA4	A	437	442	Right-handed alpha
Helix 5	AA5	A	444	456	Right-handed alpha
Helix 6	AA6	A	460	465	Right-handed alpha
Helix 7	AA7	A	468	481	Right-handed alpha
Helix 8	AA8	A	483	496	Right-handed alpha
Helix 9	AA9	A	514	518	Right-handed 310
Helix 10	AB1	A	591	595	Right-handed 310
Helix 11	AB2	A	610	612	Right-handed 310
Helix 12	AB3	A	618	656	Right-handed alpha
Helix 13	AB4	A	666	697	Right-handed alpha
Helix 14	AB5	A	702	729	Right-handed alpha
Helix 15	AB6	A	730	733	Right-handed 310
Helix 16	AB7	A	738	748	Right-handed alpha
Helix 17	AB8	A	749	751	Right-handed 310
Helix 18	AB9	A	755	775	Right-handed alpha
Helix 19	AC1	B	376	393	Right-handed alpha
Helix 20	AC2	B	396	405	Right-handed alpha
Helix 21	AC3	B	417	431	Right-handed alpha
Helix 22	AC4	B	437	442	Right-handed alpha
Helix 23	AC5	B	444	456	Right-handed alpha
Helix 24	AC6	B	460	465	Right-handed alpha
Helix 25	AC7	B	468	481	Right-handed alpha
Helix 26	AC8	B	483	496	Right-handed alpha
Helix 27	AC9	B	514	518	Right-handed 310
Helix 28	AD1	B	591	595	Right-handed 310
Helix 29	AD2	B	610	612	Right-handed 310
Helix 30	AD3	B	618	656	Right-handed alpha
Helix 31	AD4	B	666	697	Right-handed alpha
Helix 32	AD5	B	702	729	Right-handed alpha
Helix 33	AD6	B	730	733	Right-handed 310
Helix 34	AD7	B	738	748	Right-handed alpha
Helix 35	AD8	B	749	751	Right-handed 310
Helix 36	AD9	B	755	775	Right-handed alpha
Helix 37	AE1	C	376	393	Right-handed alpha
Helix 38	AE2	C	396	405	Right-handed alpha
Helix 39	AE3	C	417	431	Right-handed alpha
Helix 40	AE4	C	437	442	Right-handed alpha
Helix 41	AE5	C	444	456	Right-handed alpha
Helix 42	AE6	C	460	465	Right-handed alpha
Helix 43	AE7	C	468	481	Right-handed alpha
Helix 44	AE8	C	483	496	Right-handed alpha
Helix 45	AE9	C	514	518	Right-handed 310
Helix 46	AF1	C	591	595	Right-handed 310
Helix 47	AF2	C	610	612	Right-handed 310
Helix 48	AF3	C	618	656	Right-handed alpha
Helix 49	AF4	C	666	697	Right-handed alpha
Helix 50	AF5	C	702	729	Right-handed alpha
Helix 51	AF6	C	730	733	Right-handed 310
Helix 52	AF7	C	738	748	Right-handed alpha
Helix 53	AF8	C	749	751	Right-handed 310
Helix 54	AF9	C	755	775	Right-handed alpha
Helix 55	AG1	D	376	393	Right-handed alpha
Helix 56	AG2	D	396	405	Right-handed alpha
Helix 57	AG3	D	417	431	Right-handed alpha
Helix 58	AG4	D	437	442	Right-handed alpha
Helix 59	AG5	D	444	456	Right-handed alpha
Helix 60	AG6	D	460	465	Right-handed alpha
Helix 61	AG7	D	468	481	Right-handed alpha
Helix 62	AG8	D	483	496	Right-handed alpha
Helix 63	AG9	D	514	518	Right-handed 310
Helix 64	AH1	D	591	595	Right-handed 310
Helix 65	AH2	D	610	612	Right-handed 310
Helix 66	AH3	D	618	656	Right-handed alpha
Helix 67	AH4	D	666	697	Right-handed alpha
Helix 68	AH5	D	702	729	Right-handed alpha
Helix 69	AH6	D	730	733	Right-handed 310
Helix 70	AH7	D	738	748	Right-handed alpha
Helix 71	AH8	D	749	751	Right-handed 310
Helix 72	AH9	D	755	775	Right-handed alpha

There are 12 sheets in PDB entry 8V3U. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	500	504	first strand
Strand 2	A	546	554	parallel
Strand 3	A	566	572	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	521	525	first strand
Strand 2	A	528	534	anti-parallel
Strand 3	A	597	608	anti-parallel
Strand 4	A	538	539	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	521	525	first strand
Strand 2	A	528	534	anti-parallel
Strand 3	A	597	608	anti-parallel
Strand 4	A	578	584	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	500	504	first strand
Strand 2	B	546	554	parallel
Strand 3	B	566	572	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	521	525	first strand
Strand 2	B	528	534	anti-parallel
Strand 3	B	597	608	anti-parallel
Strand 4	B	538	539	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	521	525	first strand
Strand 2	B	528	534	anti-parallel
Strand 3	B	597	608	anti-parallel
Strand 4	B	578	584	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	500	504	first strand
Strand 2	C	546	554	parallel
Strand 3	C	566	572	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	521	525	first strand
Strand 2	C	528	534	anti-parallel
Strand 3	C	597	608	anti-parallel
Strand 4	C	538	539	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	521	525	first strand
Strand 2	C	528	534	anti-parallel
Strand 3	C	597	608	anti-parallel
Strand 4	C	578	584	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	500	504	first strand
Strand 2	D	546	554	parallel
Strand 3	D	566	572	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	521	525	first strand
Strand 2	D	528	534	anti-parallel
Strand 3	D	597	608	anti-parallel
Strand 4	D	538	539	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	521	525	first strand
Strand 2	D	528	534	anti-parallel
Strand 3	D	597	608	anti-parallel
Strand 4	D	578	584	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8V3U

Analysis of interatomic Contacts of Structural Units in PDB entry:
8V3U