Analysis of interatomic Contacts of Structural Units in PDB entry:
8V3V

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8V3V entry

There are 4 chains in PDB entry 8V3V (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PRO 54	LEU 775
B	PRO 54	LEU 775
C	PRO 54	LEU 775
D	PRO 54	LEU 775

There are 92 helices in PDB entry 8V3V. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	82	94	Right-handed alpha
Helix 2	AA2	A	136	157	Right-handed alpha
Helix 3	AA3	A	173	189	Right-handed alpha
Helix 4	AA4	A	193	205	Right-handed alpha
Helix 5	AA5	A	250	258	Right-handed alpha
Helix 6	AA6	A	259	262	Right-handed 310
Helix 7	AA7	A	283	296	Right-handed alpha
Helix 8	AA8	A	303	328	Right-handed alpha
Helix 9	AA9	A	342	355	Right-handed alpha
Helix 10	AB1	A	376	393	Right-handed alpha
Helix 11	AB2	A	396	405	Right-handed alpha
Helix 12	AB3	A	417	431	Right-handed alpha
Helix 13	AB4	A	444	455	Right-handed alpha
Helix 14	AB5	A	460	465	Right-handed alpha
Helix 15	AB6	A	468	481	Right-handed alpha
Helix 16	AB7	A	483	491	Right-handed alpha
Helix 17	AB8	A	491	496	Right-handed alpha
Helix 18	AB9	A	608	612	Right-handed 310
Helix 19	AC1	A	627	656	Right-handed alpha
Helix 20	AC2	A	667	697	Right-handed alpha
Helix 21	AC3	A	702	729	Right-handed alpha
Helix 22	AC4	A	738	749	Right-handed alpha
Helix 23	AC5	A	758	775	Right-handed alpha
Helix 24	AC6	B	82	94	Right-handed alpha
Helix 25	AC7	B	136	157	Right-handed alpha
Helix 26	AC8	B	173	189	Right-handed alpha
Helix 27	AC9	B	193	205	Right-handed alpha
Helix 28	AD1	B	250	258	Right-handed alpha
Helix 29	AD2	B	259	262	Right-handed 310
Helix 30	AD3	B	283	296	Right-handed alpha
Helix 31	AD4	B	303	328	Right-handed alpha
Helix 32	AD5	B	342	355	Right-handed alpha
Helix 33	AD6	B	376	393	Right-handed alpha
Helix 34	AD7	B	396	405	Right-handed alpha
Helix 35	AD8	B	417	431	Right-handed alpha
Helix 36	AD9	B	444	455	Right-handed alpha
Helix 37	AE1	B	460	465	Right-handed alpha
Helix 38	AE2	B	468	481	Right-handed alpha
Helix 39	AE3	B	483	491	Right-handed alpha
Helix 40	AE4	B	491	496	Right-handed alpha
Helix 41	AE5	B	608	612	Right-handed 310
Helix 42	AE6	B	627	656	Right-handed alpha
Helix 43	AE7	B	667	697	Right-handed alpha
Helix 44	AE8	B	702	729	Right-handed alpha
Helix 45	AE9	B	738	749	Right-handed alpha
Helix 46	AF1	B	758	775	Right-handed alpha
Helix 47	AF2	C	82	94	Right-handed alpha
Helix 48	AF3	C	136	157	Right-handed alpha
Helix 49	AF4	C	173	189	Right-handed alpha
Helix 50	AF5	C	193	205	Right-handed alpha
Helix 51	AF6	C	250	258	Right-handed alpha
Helix 52	AF7	C	259	262	Right-handed 310
Helix 53	AF8	C	283	296	Right-handed alpha
Helix 54	AF9	C	303	328	Right-handed alpha
Helix 55	AG1	C	342	355	Right-handed alpha
Helix 56	AG2	C	376	393	Right-handed alpha
Helix 57	AG3	C	396	405	Right-handed alpha
Helix 58	AG4	C	417	431	Right-handed alpha
Helix 59	AG5	C	444	455	Right-handed alpha
Helix 60	AG6	C	460	465	Right-handed alpha
Helix 61	AG7	C	468	481	Right-handed alpha
Helix 62	AG8	C	483	491	Right-handed alpha
Helix 63	AG9	C	491	496	Right-handed alpha
Helix 64	AH1	C	608	612	Right-handed 310
Helix 65	AH2	C	627	656	Right-handed alpha
Helix 66	AH3	C	667	697	Right-handed alpha
Helix 67	AH4	C	702	729	Right-handed alpha
Helix 68	AH5	C	738	749	Right-handed alpha
Helix 69	AH6	C	758	775	Right-handed alpha
Helix 70	AH7	D	82	94	Right-handed alpha
Helix 71	AH8	D	136	157	Right-handed alpha
Helix 72	AH9	D	173	189	Right-handed alpha
Helix 73	AI1	D	193	205	Right-handed alpha
Helix 74	AI2	D	250	258	Right-handed alpha
Helix 75	AI3	D	259	262	Right-handed 310
Helix 76	AI4	D	283	296	Right-handed alpha
Helix 77	AI5	D	303	328	Right-handed alpha
Helix 78	AI6	D	342	355	Right-handed alpha
Helix 79	AI7	D	376	393	Right-handed alpha
Helix 80	AI8	D	396	405	Right-handed alpha
Helix 81	AI9	D	417	431	Right-handed alpha
Helix 82	AJ1	D	444	455	Right-handed alpha
Helix 83	AJ2	D	460	465	Right-handed alpha
Helix 84	AJ3	D	468	481	Right-handed alpha
Helix 85	AJ4	D	483	491	Right-handed alpha
Helix 86	AJ5	D	491	496	Right-handed alpha
Helix 87	AJ6	D	608	612	Right-handed 310
Helix 88	AJ7	D	627	656	Right-handed alpha
Helix 89	AJ8	D	667	697	Right-handed alpha
Helix 90	AJ9	D	702	729	Right-handed alpha
Helix 91	AK1	D	738	749	Right-handed alpha
Helix 92	AK2	D	758	775	Right-handed alpha

There are 12 sheets in PDB entry 8V3V. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	226	228	first strand
Strand 2	A	235	238	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	503	504	first strand
Strand 2	A	550	553	parallel
Strand 3	A	567	570	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	529	534	first strand
Strand 2	A	600	607	anti-parallel
Strand 3	A	578	580	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	226	228	first strand
Strand 2	B	235	238	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	503	504	first strand
Strand 2	B	550	553	parallel
Strand 3	B	567	570	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	529	534	first strand
Strand 2	B	600	607	anti-parallel
Strand 3	B	578	580	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	226	228	first strand
Strand 2	C	235	238	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	503	504	first strand
Strand 2	C	550	553	parallel
Strand 3	C	567	570	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	529	534	first strand
Strand 2	C	600	607	anti-parallel
Strand 3	C	578	580	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	226	228	first strand
Strand 2	D	235	238	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	503	504	first strand
Strand 2	D	550	553	parallel
Strand 3	D	567	570	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	529	534	first strand
Strand 2	D	600	607	anti-parallel
Strand 3	D	578	580	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8V3V

Analysis of interatomic Contacts of Structural Units in PDB entry:
8V3V