Analysis of interatomic Contacts of Structural Units in PDB entry:
8V44


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8V44 entry

There is 1 chain in PDB entry 8V44 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 107LYS 725
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 33 helices in PDB entry 8V44. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
115 117Right-handed 310
Helix 2
AA2
A
118 131Right-handed alpha
Helix 3
AA3
A
144 159Right-handed alpha
Helix 4
AA4
A
168 170Right-handed 310
Helix 5
AA5
A
171 180Right-handed alpha
Helix 6
AA6
A
184 189Right-handed alpha
Helix 7
AA7
A
195 199Right-handed 310
Helix 8
AA8
A
201 212Right-handed alpha
Helix 9
AA9
A
214 223Right-handed alpha
Helix 10
AB1
A
246 254Right-handed alpha
Helix 11
AB2
A
258 263Right-handed alpha
Helix 12
AB3
A
272 282Right-handed alpha
Helix 13
AB4
A
294 306Right-handed alpha
Helix 14
AB5
A
337 339Right-handed 310
Helix 15
AB6
A
340 349Right-handed alpha
Helix 16
AB7
A
355 364Right-handed alpha
Helix 17
AB8
A
369 391Right-handed alpha
Helix 18
AB9
A
401 404Right-handed 310
Helix 19
AC1
A
405 420Right-handed alpha
Helix 20
AC2
A
426 445Right-handed alpha
Helix 21
AC3
A
470 480Right-handed alpha
Helix 22
AC4
A
498 505Right-handed alpha
Helix 23
AC5
A
520 524Right-handed 310
Helix 24
AC6
A
541 559Right-handed alpha
Helix 25
AC7
A
569 581Right-handed alpha
Helix 26
AC8
A
596 610Right-handed alpha
Helix 27
AC9
A
620 625Right-handed alpha
Helix 28
AD1
A
636 640Right-handed 310
Helix 29
AD2
A
658 669Right-handed alpha
Helix 30
AD3
A
669 686Right-handed alpha
Helix 31
AD4
A
703 707Right-handed 310
Helix 32
AD5
A
710 712Right-handed 310
Helix 33
AD6
A
713 721Right-handed alpha
Back to top of page

There are 3 sheets in PDB entry 8V44. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
190 192first strand
Strand 2
A
290 293parallel
Strand 3
A
163 166parallel
Strand 4
A
330 335parallel
Strand 5
A
481 488parallel
Strand 6
A
134 138parallel
Strand 7
A
512 514parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
351 354first strand
Strand 2
A
462 466anti-parallel
Strand 3
A
449 453anti-parallel
Strand 4
A
398 399anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
527 529first strand
Strand 2
A
697 701parallel
Strand 3
A
643 648parallel
Strand 4
A
562 566parallel
Strand 5
A
615 618parallel
Strand 6
A
588 590parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il