Analysis of interatomic Contacts of Structural Units in PDB entry:
8V48

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8V48 entry

There are 9 chains in PDB entry 8V48 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ILE 3	SER 446
B	ILE 3	ILE 444
D	SER 3	ILE 307
C	ILE 3	SER 446
F	ILE 3	SER 446
H	ILE 3	SER 446
G	SER 3	ILE 307
K	ILE 3	SER 446
J	SER 3	ILE 307

There are126 helices in PDB entry 8V48. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	38	51	Right-handed alpha
Helix 2	AA2	A	53	60	Right-handed 310
Helix 3	AA3	A	102	114	Right-handed alpha
Helix 4	AA4	A	125	138	Right-handed alpha
Helix 5	AA5	A	151	160	Right-handed alpha
Helix 6	AA6	A	177	189	Right-handed alpha
Helix 7	AA7	A	199	238	Right-handed alpha
Helix 8	AA8	A	249	264	Right-handed alpha
Helix 9	AA9	A	265	269	Right-handed 310
Helix 10	AB1	A	273	287	Right-handed alpha
Helix 11	AB2	A	296	319	Right-handed alpha
Helix 12	AB3	A	319	331	Right-handed alpha
Helix 13	AB4	A	362	366	Right-handed 310
Helix 14	AB5	A	367	379	Right-handed alpha
Helix 15	AB6	A	399	412	Right-handed alpha
Helix 16	AB7	B	38	52	Right-handed alpha
Helix 17	AB8	B	53	60	Right-handed 310
Helix 18	AB9	B	102	112	Right-handed alpha
Helix 19	AC1	B	127	139	Right-handed alpha
Helix 20	AC2	B	151	160	Right-handed alpha
Helix 21	AC3	B	175	189	Right-handed alpha
Helix 22	AC4	B	199	237	Right-handed alpha
Helix 23	AC5	B	250	264	Right-handed alpha
Helix 24	AC6	B	273	288	Right-handed alpha
Helix 25	AC7	B	294	319	Right-handed alpha
Helix 26	AC8	B	319	331	Right-handed alpha
Helix 27	AC9	B	362	366	Right-handed 310
Helix 28	AD1	B	367	380	Right-handed alpha
Helix 29	AD2	B	399	412	Right-handed alpha
Helix 30	AD3	B	432	434	Right-handed 310
Helix 31	AD4	D	7	18	Right-handed alpha
Helix 32	AD5	D	27	42	Right-handed alpha
Helix 33	AD6	D	53	55	Right-handed 310
Helix 34	AD7	D	59	64	Right-handed alpha
Helix 35	AD8	D	65	77	Right-handed alpha
Helix 36	AD9	D	120	126	Right-handed 310
Helix 37	AE1	D	127	138	Right-handed alpha
Helix 38	AE2	D	143	172	Right-handed alpha
Helix 39	AE3	D	176	182	Right-handed alpha
Helix 40	AE4	D	205	226	Right-handed alpha
Helix 41	AE5	D	227	232	Right-handed alpha
Helix 42	AE6	D	236	257	Right-handed alpha
Helix 43	AE7	D	260	273	Right-handed alpha
Helix 44	AE8	D	275	291	Right-handed alpha
Helix 45	AE9	D	300	307	Right-handed alpha
Helix 46	AF1	C	38	51	Right-handed alpha
Helix 47	AF2	C	53	60	Right-handed 310
Helix 48	AF3	C	102	114	Right-handed alpha
Helix 49	AF4	C	125	138	Right-handed alpha
Helix 50	AF5	C	151	161	Right-handed alpha
Helix 51	AF6	C	177	189	Right-handed alpha
Helix 52	AF7	C	199	234	Right-handed alpha
Helix 53	AF8	C	249	264	Right-handed alpha
Helix 54	AF9	C	265	269	Right-handed 310
Helix 55	AG1	C	273	287	Right-handed alpha
Helix 56	AG2	C	296	319	Right-handed alpha
Helix 57	AG3	C	319	331	Right-handed alpha
Helix 58	AG4	C	362	366	Right-handed 310
Helix 59	AG5	C	367	380	Right-handed alpha
Helix 60	AG6	C	399	413	Right-handed alpha
Helix 61	AG7	C	432	434	Right-handed 310
Helix 62	AG8	F	38	51	Right-handed alpha
Helix 63	AG9	F	53	60	Right-handed 310
Helix 64	AH1	F	102	114	Right-handed alpha
Helix 65	AH2	F	125	138	Right-handed alpha
Helix 66	AH3	F	151	161	Right-handed alpha
Helix 67	AH4	F	177	189	Right-handed alpha
Helix 68	AH5	F	199	235	Right-handed alpha
Helix 69	AH6	F	249	264	Right-handed alpha
Helix 70	AH7	F	273	287	Right-handed alpha
Helix 71	AH8	F	296	319	Right-handed alpha
Helix 72	AH9	F	319	331	Right-handed alpha
Helix 73	AI1	F	362	366	Right-handed 310
Helix 74	AI2	F	367	380	Right-handed alpha
Helix 75	AI3	F	399	412	Right-handed alpha
Helix 76	AI4	F	432	434	Right-handed 310
Helix 77	AI5	H	38	52	Right-handed alpha
Helix 78	AI6	H	55	60	Right-handed 310
Helix 79	AI7	H	102	114	Right-handed alpha
Helix 80	AI8	H	125	137	Right-handed alpha
Helix 81	AI9	H	151	161	Right-handed alpha
Helix 82	AJ1	H	177	189	Right-handed alpha
Helix 83	AJ2	H	322	333	Right-handed alpha
Helix 84	AJ3	H	367	381	Right-handed alpha
Helix 85	AJ4	H	399	405	Right-handed alpha
Helix 86	AJ5	H	405	412	Right-handed alpha
Helix 87	AJ6	G	7	18	Right-handed alpha
Helix 88	AJ7	G	27	42	Right-handed alpha
Helix 89	AJ8	G	53	55	Right-handed 310
Helix 90	AJ9	G	59	64	Right-handed alpha
Helix 91	AK1	G	65	77	Right-handed alpha
Helix 92	AK2	G	120	126	Right-handed 310
Helix 93	AK3	G	127	138	Right-handed alpha
Helix 94	AK4	G	143	172	Right-handed alpha
Helix 95	AK5	G	176	182	Right-handed alpha
Helix 96	AK6	G	205	226	Right-handed alpha
Helix 97	AK7	G	227	232	Right-handed alpha
Helix 98	AK8	G	236	257	Right-handed alpha
Helix 99	AK9	G	260	273	Right-handed alpha
Helix 100	AL1	G	275	291	Right-handed alpha
Helix 101	AL2	G	300	307	Right-handed alpha
Helix 102	AL3	K	38	50	Right-handed alpha
Helix 103	AL4	K	53	59	Right-handed 310
Helix 104	AL5	K	102	114	Right-handed alpha
Helix 105	AL6	K	125	138	Right-handed alpha
Helix 106	AL7	K	151	159	Right-handed alpha
Helix 107	AL8	K	177	189	Right-handed alpha
Helix 108	AL9	K	322	333	Right-handed alpha
Helix 109	AM1	K	362	366	Right-handed 310
Helix 110	AM2	K	367	379	Right-handed alpha
Helix 111	AM3	K	405	412	Right-handed alpha
Helix 112	AM4	K	432	434	Right-handed 310
Helix 113	AM5	J	8	18	Right-handed alpha
Helix 114	AM6	J	27	42	Right-handed alpha
Helix 115	AM7	J	59	64	Right-handed alpha
Helix 116	AM8	J	65	77	Right-handed alpha
Helix 117	AM9	J	120	126	Right-handed 310
Helix 118	AN1	J	127	138	Right-handed alpha
Helix 119	AN2	J	143	172	Right-handed alpha
Helix 120	AN3	J	176	182	Right-handed alpha
Helix 121	AN4	J	205	225	Right-handed alpha
Helix 122	AN5	J	227	232	Right-handed alpha
Helix 123	AN6	J	236	257	Right-handed alpha
Helix 124	AN7	J	260	273	Right-handed alpha
Helix 125	AN8	J	275	291	Right-handed alpha
Helix 126	AN9	J	300	307	Right-handed alpha

There are 24 sheets in PDB entry 8V48. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	97	101	first strand
Strand 2	A	85	91	anti-parallel
Strand 3	A	74	82	anti-parallel
Strand 4	A	64	69	anti-parallel
Strand 5	A	6	14	anti-parallel
Strand 6	A	18	23	anti-parallel
Strand 7	A	442	443	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	144	148	first strand
Strand 2	A	387	392	parallel
Strand 3	A	418	422	parallel
Strand 4	A	28	33	parallel
Strand 5	A	436	439	parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	337	341	first strand
Strand 2	A	350	354	anti-parallel
Strand 3	A	360	361	anti-parallel

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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	97	101	first strand
Strand 2	B	85	91	anti-parallel
Strand 3	B	74	82	anti-parallel
Strand 4	B	64	69	anti-parallel
Strand 5	B	6	14	anti-parallel
Strand 6	B	18	23	anti-parallel
Strand 7	B	442	443	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	144	148	first strand
Strand 2	B	387	392	parallel
Strand 3	B	419	422	parallel
Strand 4	B	28	32	parallel
Strand 5	B	436	438	parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	337	341	first strand
Strand 2	B	350	354	anti-parallel
Strand 3	B	360	361	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	48	51	first strand
Strand 2	D	22	25	parallel
Strand 3	D	83	87	parallel
Strand 4	D	113	115	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	94	96	first strand
Strand 2	D	100	102	anti-parallel

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There are 7 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	97	101	first strand
Strand 2	C	85	92	anti-parallel
Strand 3	C	74	82	anti-parallel
Strand 4	C	64	69	anti-parallel
Strand 5	C	6	14	anti-parallel
Strand 6	C	18	23	anti-parallel
Strand 7	C	442	443	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	146	148	first strand
Strand 2	C	388	392	parallel
Strand 3	C	418	422	parallel
Strand 4	C	28	33	parallel
Strand 5	C	436	439	parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	337	341	first strand
Strand 2	C	350	354	anti-parallel
Strand 3	C	360	361	anti-parallel

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There are 7 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	97	101	first strand
Strand 2	F	85	92	anti-parallel
Strand 3	F	74	82	anti-parallel
Strand 4	F	64	69	anti-parallel
Strand 5	F	6	14	anti-parallel
Strand 6	F	18	23	anti-parallel
Strand 7	F	442	443	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	146	148	first strand
Strand 2	F	388	392	parallel
Strand 3	F	418	422	parallel
Strand 4	F	28	32	parallel
Strand 5	F	436	438	parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	337	341	first strand
Strand 2	F	350	354	anti-parallel
Strand 3	F	360	361	anti-parallel

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There are 7 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	97	101	first strand
Strand 2	H	85	91	anti-parallel
Strand 3	H	74	82	anti-parallel
Strand 4	H	64	69	anti-parallel
Strand 5	H	6	14	anti-parallel
Strand 6	H	18	23	anti-parallel
Strand 7	H	442	443	anti-parallel

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There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	146	148	first strand
Strand 2	H	389	392	parallel
Strand 3	H	419	422	parallel
Strand 4	H	28	31	parallel
Strand 5	H	436	437	parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	337	339	first strand
Strand 2	H	352	354	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	47	51	first strand
Strand 2	G	21	25	parallel
Strand 3	G	83	87	parallel
Strand 4	G	113	115	parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	94	96	first strand
Strand 2	G	100	102	anti-parallel

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There are 7 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	97	101	first strand
Strand 2	K	85	92	anti-parallel
Strand 3	K	74	82	anti-parallel
Strand 4	K	64	69	anti-parallel
Strand 5	K	6	14	anti-parallel
Strand 6	K	18	23	anti-parallel
Strand 7	K	442	443	anti-parallel

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There are 5 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	147	148	first strand
Strand 2	K	389	392	parallel
Strand 3	K	419	422	parallel
Strand 4	K	28	32	parallel
Strand 5	K	436	438	parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	6	7	first strand
Strand 2	J	55	56	parallel

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There are 5 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	48	51	first strand
Strand 2	J	22	25	parallel
Strand 3	J	83	87	parallel
Strand 4	J	113	115	parallel
Strand 5	J	108	109	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	94	95	first strand
Strand 2	J	101	102	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8V48

Analysis of interatomic Contacts of Structural Units in PDB entry:
8V48