Analysis of interatomic Contacts of Structural Units in PDB entry:
8V49

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8V49 entry

There are 4 chains in PDB entry 8V49 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ILE 3	ILE 444
B	ILE 3	SER 440
D	ILE 3	ILE 444
C	ILE 3	ILE 444

There are 67 helices in PDB entry 8V49. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	39	51	Right-handed alpha
Helix 2	AA2	A	53	60	Right-handed 310
Helix 3	AA3	A	81	85	Right-handed 310
Helix 4	AA4	A	102	110	Right-handed alpha
Helix 5	AA5	A	127	138	Right-handed alpha
Helix 6	AA6	A	151	159	Right-handed alpha
Helix 7	AA7	A	177	189	Right-handed alpha
Helix 8	AA8	A	199	237	Right-handed alpha
Helix 9	AA9	A	249	264	Right-handed alpha
Helix 10	AB1	A	265	269	Right-handed 310
Helix 11	AB2	A	273	287	Right-handed alpha
Helix 12	AB3	A	296	319	Right-handed alpha
Helix 13	AB4	A	319	331	Right-handed alpha
Helix 14	AB5	A	362	366	Right-handed 310
Helix 15	AB6	A	367	380	Right-handed alpha
Helix 16	AB7	A	399	413	Right-handed alpha
Helix 17	AB8	A	425	430	Right-handed alpha
Helix 18	AB9	A	432	434	Right-handed 310
Helix 19	AC1	B	13	17	Right-handed 310
Helix 20	AC2	B	39	51	Right-handed alpha
Helix 21	AC3	B	53	60	Right-handed 310
Helix 22	AC4	B	102	110	Right-handed alpha
Helix 23	AC5	B	127	139	Right-handed alpha
Helix 24	AC6	B	151	161	Right-handed alpha
Helix 25	AC7	B	175	189	Right-handed alpha
Helix 26	AC8	B	199	239	Right-handed alpha
Helix 27	AC9	B	250	264	Right-handed alpha
Helix 28	AD1	B	273	288	Right-handed alpha
Helix 29	AD2	B	294	319	Right-handed alpha
Helix 30	AD3	B	322	331	Right-handed alpha
Helix 31	AD4	B	362	366	Right-handed 310
Helix 32	AD5	B	370	380	Right-handed alpha
Helix 33	AD6	B	399	413	Right-handed alpha
Helix 34	AD7	D	39	51	Right-handed alpha
Helix 35	AD8	D	53	60	Right-handed 310
Helix 36	AD9	D	81	85	Right-handed 310
Helix 37	AE1	D	102	110	Right-handed alpha
Helix 38	AE2	D	127	138	Right-handed alpha
Helix 39	AE3	D	151	159	Right-handed alpha
Helix 40	AE4	D	177	189	Right-handed alpha
Helix 41	AE5	D	199	237	Right-handed alpha
Helix 42	AE6	D	249	264	Right-handed alpha
Helix 43	AE7	D	265	269	Right-handed 310
Helix 44	AE8	D	273	287	Right-handed alpha
Helix 45	AE9	D	296	319	Right-handed alpha
Helix 46	AF1	D	319	331	Right-handed alpha
Helix 47	AF2	D	362	366	Right-handed 310
Helix 48	AF3	D	367	380	Right-handed alpha
Helix 49	AF4	D	399	413	Right-handed alpha
Helix 50	AF5	D	425	430	Right-handed alpha
Helix 51	AF6	D	432	434	Right-handed 310
Helix 52	AF7	C	39	51	Right-handed alpha
Helix 53	AF8	C	53	60	Right-handed 310
Helix 54	AF9	C	102	110	Right-handed alpha
Helix 55	AG1	C	127	138	Right-handed alpha
Helix 56	AG2	C	151	159	Right-handed alpha
Helix 57	AG3	C	178	189	Right-handed alpha
Helix 58	AG4	C	199	237	Right-handed alpha
Helix 59	AG5	C	250	264	Right-handed alpha
Helix 60	AG6	C	273	287	Right-handed alpha
Helix 61	AG7	C	294	319	Right-handed alpha
Helix 62	AG8	C	319	331	Right-handed alpha
Helix 63	AG9	C	362	366	Right-handed 310
Helix 64	AH1	C	367	380	Right-handed alpha
Helix 65	AH2	C	399	413	Right-handed alpha
Helix 66	AH3	C	425	430	Right-handed alpha
Helix 67	AH4	C	432	434	Right-handed 310

There are 12 sheets in PDB entry 8V49. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	98	101	first strand
Strand 2	A	87	90	anti-parallel
Strand 3	A	74	80	anti-parallel
Strand 4	A	64	69	anti-parallel
Strand 5	A	6	14	anti-parallel
Strand 6	A	18	23	anti-parallel
Strand 7	A	442	443	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	146	148	first strand
Strand 2	A	388	391	parallel
Strand 3	A	418	422	parallel
Strand 4	A	28	33	parallel
Strand 5	A	436	439	parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	337	340	first strand
Strand 2	A	351	354	anti-parallel
Strand 3	A	360	361	anti-parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	20	23	first strand
Strand 2	B	6	12	anti-parallel
Strand 3	B	64	69	anti-parallel
Strand 4	B	74	81	anti-parallel
Strand 5	B	86	92	anti-parallel
Strand 6	B	97	101	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	29	31	first strand
Strand 2	B	419	422	parallel
Strand 3	B	389	392	parallel
Strand 4	B	147	148	parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	338	341	first strand
Strand 2	B	350	354	anti-parallel
Strand 3	B	360	361	anti-parallel

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There are 7 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	98	101	first strand
Strand 2	D	87	90	anti-parallel
Strand 3	D	74	80	anti-parallel
Strand 4	D	64	69	anti-parallel
Strand 5	D	6	14	anti-parallel
Strand 6	D	18	23	anti-parallel
Strand 7	D	442	443	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	146	148	first strand
Strand 2	D	389	391	parallel
Strand 3	D	419	422	parallel
Strand 4	D	28	32	parallel
Strand 5	D	436	438	parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	337	340	first strand
Strand 2	D	351	354	anti-parallel
Strand 3	D	360	361	anti-parallel

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There are 7 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	98	101	first strand
Strand 2	C	85	92	anti-parallel
Strand 3	C	74	82	anti-parallel
Strand 4	C	64	69	anti-parallel
Strand 5	C	6	14	anti-parallel
Strand 6	C	18	23	anti-parallel
Strand 7	C	442	443	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	144	148	first strand
Strand 2	C	387	391	parallel
Strand 3	C	418	422	parallel
Strand 4	C	29	32	parallel
Strand 5	C	436	438	parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	337	341	first strand
Strand 2	C	350	354	anti-parallel
Strand 3	C	360	361	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8V49

Analysis of interatomic Contacts of Structural Units in PDB entry:
8V49