Analysis of interatomic Contacts of Structural Units in PDB entry:
8V4H


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8V4H entry

There are 2 chains in PDB entry 8V4H (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1ASN 334
B
 GLU -7ASN 334
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 29 helices in PDB entry 8V4H. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
1 21Right-handed alpha
Helix 2
AA2
A
35 46Right-handed alpha
Helix 3
AA3
A
57 68Right-handed alpha
Helix 4
AA4
A
71 73Right-handed 310
Helix 5
AA5
A
80 84Right-handed 310
Helix 6
AA6
A
99 106Right-handed alpha
Helix 7
AA7
A
106 128Right-handed alpha
Helix 8
AA8
A
140 143Right-handed 310
Helix 9
AA9
A
162 164Right-handed 310
Helix 10
AB1
A
165 185Right-handed alpha
Helix 11
AB2
A
208 221Right-handed alpha
Helix 12
AB3
A
238 251Right-handed alpha
Helix 13
AB4
A
269 280Right-handed alpha
Helix 14
AB5
A
305 311Right-handed alpha
Helix 15
AB6
A
318 332Right-handed alpha
Helix 16
AB7
B
2 23Right-handed alpha
Helix 17
AB8
B
35 46Right-handed alpha
Helix 18
AB9
B
57 68Right-handed alpha
Helix 19
AC1
B
71 73Right-handed 310
Helix 20
AC2
B
99 106Right-handed alpha
Helix 21
AC3
B
106 128Right-handed alpha
Helix 22
AC4
B
140 143Right-handed 310
Helix 23
AC5
B
162 164Right-handed 310
Helix 24
AC6
B
165 186Right-handed alpha
Helix 25
AC7
B
208 221Right-handed alpha
Helix 26
AC8
B
238 250Right-handed alpha
Helix 27
AC9
B
269 279Right-handed alpha
Helix 28
AD1
B
305 311Right-handed alpha
Helix 29
AD2
B
318 334Right-handed alpha
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There are 10 sheets in PDB entry 8V4H. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
75 78first strand
Strand 2
A
50 54parallel
Strand 3
A
27 31parallel
Strand 4
A
90 93parallel
Strand 5
A
132 138parallel
Strand 6
A
188 194parallel
Strand 7
A
255 260parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
147 150first strand
Strand 2
A
301 303parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
197 198first strand
Strand 2
A
236 237parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
222 225first strand
Strand 2
A
283 286parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
232 234first strand
Strand 2
A
266 268anti-parallel
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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
75 78first strand
Strand 2
B
51 54parallel
Strand 3
B
28 31parallel
Strand 4
B
90 93parallel
Strand 5
B
132 138parallel
Strand 6
B
188 194parallel
Strand 7
B
255 260parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
147 150first strand
Strand 2
B
301 303parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
197 198first strand
Strand 2
B
236 237parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
222 225first strand
Strand 2
B
283 286parallel
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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
232 234first strand
Strand 2
B
266 268anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il