Analysis of interatomic Contacts of Structural Units in PDB entry:
8V4L

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8V4L entry

There are 5 chains in PDB entry 8V4L (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	VAL 440
B	MET 1	UNK 505
C	MET 1	SER 439
D	MET 1	ALA 428
E	ASN 1	GLY 602

There are 99 helices in PDB entry 8V4L. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	10	28	Right-handed alpha
Helix 2	AA2	A	47	51	Right-handed 310
Helix 3	AA3	A	72	80	Right-handed alpha
Helix 4	AA4	A	88	90	Right-handed 310
Helix 5	AA5	A	102	108	Right-handed alpha
Helix 6	AA6	A	114	128	Right-handed alpha
Helix 7	AA7	A	144	161	Right-handed alpha
Helix 8	AA8	A	182	190	Right-handed alpha
Helix 9	AA9	A	190	197	Right-handed alpha
Helix 10	AB1	A	205	216	Right-handed alpha
Helix 11	AB2	A	223	244	Right-handed alpha
Helix 12	AB3	A	251	260	Right-handed alpha
Helix 13	AB4	A	280	284	Right-handed 310
Helix 14	AB5	A	287	296	Right-handed alpha
Helix 15	AB6	A	306	310	Right-handed 310
Helix 16	AB7	A	324	338	Right-handed alpha
Helix 17	AB8	A	383	400	Right-handed alpha
Helix 18	AB9	A	404	410	Right-handed alpha
Helix 19	AC1	A	415	435	Right-handed alpha
Helix 20	AC2	B	10	28	Right-handed alpha
Helix 21	AC3	B	41	46	Right-handed alpha
Helix 22	AC4	B	47	49	Right-handed 310
Helix 23	AC5	B	69	78	Right-handed alpha
Helix 24	AC6	B	81	85	Right-handed 310
Helix 25	AC7	B	86	88	Right-handed 310
Helix 26	AC8	B	100	106	Right-handed alpha
Helix 27	AC9	B	107	126	Right-handed alpha
Helix 28	AD1	B	142	159	Right-handed alpha
Helix 29	AD2	B	172	176	Right-handed 310
Helix 30	AD3	B	180	196	Right-handed alpha
Helix 31	AD4	B	204	214	Right-handed alpha
Helix 32	AD5	B	221	237	Right-handed alpha
Helix 33	AD6	B	238	241	Right-handed 310
Helix 34	AD7	B	249	258	Right-handed alpha
Helix 35	AD8	B	278	282	Right-handed 310
Helix 36	AD9	B	285	294	Right-handed alpha
Helix 37	AE1	B	295	299	Right-handed 310
Helix 38	AE2	B	304	308	Right-handed 310
Helix 39	AE3	B	322	337	Right-handed alpha
Helix 40	AE4	B	338	341	Right-handed 310
Helix 41	AE5	B	374	390	Right-handed alpha
Helix 42	AE6	B	394	402	Right-handed alpha
Helix 43	AE7	B	404	425	Right-handed alpha
Helix 44	AE8	C	10	28	Right-handed alpha
Helix 45	AE9	C	47	51	Right-handed 310
Helix 46	AF1	C	72	81	Right-handed alpha
Helix 47	AF2	C	82	85	Right-handed 310
Helix 48	AF3	C	88	90	Right-handed 310
Helix 49	AF4	C	102	108	Right-handed alpha
Helix 50	AF5	C	110	127	Right-handed alpha
Helix 51	AF6	C	143	161	Right-handed alpha
Helix 52	AF7	C	182	190	Right-handed alpha
Helix 53	AF8	C	190	197	Right-handed alpha
Helix 54	AF9	C	206	216	Right-handed alpha
Helix 55	AG1	C	223	239	Right-handed alpha
Helix 56	AG2	C	239	244	Right-handed alpha
Helix 57	AG3	C	251	260	Right-handed alpha
Helix 58	AG4	C	279	283	Right-handed 310
Helix 59	AG5	C	287	296	Right-handed alpha
Helix 60	AG6	C	306	310	Right-handed 310
Helix 61	AG7	C	324	338	Right-handed alpha
Helix 62	AG8	C	383	400	Right-handed alpha
Helix 63	AG9	C	404	411	Right-handed alpha
Helix 64	AH1	C	415	435	Right-handed alpha
Helix 65	AH2	D	10	28	Right-handed alpha
Helix 66	AH3	D	40	46	Right-handed alpha
Helix 67	AH4	D	47	49	Right-handed 310
Helix 68	AH5	D	70	78	Right-handed alpha
Helix 69	AH6	D	86	88	Right-handed 310
Helix 70	AH7	D	100	106	Right-handed alpha
Helix 71	AH8	D	107	126	Right-handed alpha
Helix 72	AH9	D	145	159	Right-handed alpha
Helix 73	AI1	D	172	176	Right-handed 310
Helix 74	AI2	D	180	196	Right-handed alpha
Helix 75	AI3	D	203	214	Right-handed alpha
Helix 76	AI4	D	221	237	Right-handed alpha
Helix 77	AI5	D	237	242	Right-handed alpha
Helix 78	AI6	D	249	258	Right-handed alpha
Helix 79	AI7	D	285	294	Right-handed alpha
Helix 80	AI8	D	295	299	Right-handed 310
Helix 81	AI9	D	304	308	Right-handed 310
Helix 82	AJ1	D	322	337	Right-handed alpha
Helix 83	AJ2	D	338	341	Right-handed 310
Helix 84	AJ3	D	374	390	Right-handed alpha
Helix 85	AJ4	D	394	400	Right-handed alpha
Helix 86	AJ5	D	405	425	Right-handed alpha
Helix 87	AJ6	E	98	104	Right-handed alpha
Helix 88	AJ7	E	160	175	Right-handed alpha
Helix 89	AJ8	E	256	270	Right-handed alpha
Helix 90	AJ9	E	274	284	Right-handed alpha
Helix 91	AK1	E	293	300	Right-handed alpha
Helix 92	AK2	E	310	314	Right-handed 310
Helix 93	AK3	E	323	340	Right-handed alpha
Helix 94	AK4	E	451	467	Right-handed alpha
Helix 95	AK5	E	480	485	Right-handed 310
Helix 96	AK6	E	494	497	Right-handed 310
Helix 97	AK7	E	498	508	Right-handed alpha
Helix 98	AK8	E	551	570	Right-handed alpha
Helix 99	AK9	E	585	601	Right-handed alpha

There are 14 sheets in PDB entry 8V4L. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	92	94	first strand
Strand 2	A	65	69	parallel
Strand 3	A	4	9	parallel
Strand 4	A	134	138	parallel
Strand 5	A	165	168	parallel
Strand 6	A	200	201	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	53	55	first strand
Strand 2	A	61	63	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	272	273	first strand
Strand 2	A	373	381	anti-parallel
Strand 3	A	312	321	anti-parallel
Strand 4	A	351	356	parallel

Back to list of sheets
Back to top of page

There are 10 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	90	92	first strand
Strand 2	B	63	67	parallel
Strand 3	B	3	9	parallel
Strand 4	B	130	138	parallel
Strand 5	B	163	170	parallel
Strand 6	B	198	203	parallel
Strand 7	B	265	271	parallel
Strand 8	B	364	371	anti-parallel
Strand 9	B	310	318	anti-parallel
Strand 10	B	349	354	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	51	53	first strand
Strand 2	B	59	61	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	92	94	first strand
Strand 2	C	65	69	parallel
Strand 3	C	3	9	parallel
Strand 4	C	132	140	parallel
Strand 5	C	165	172	parallel
Strand 6	C	201	205	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	53	55	first strand
Strand 2	C	61	63	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	269	273	first strand
Strand 2	C	373	381	anti-parallel
Strand 3	C	312	321	anti-parallel
Strand 4	C	351	356	parallel

Back to list of sheets
Back to top of page

There are 11 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	90	92	first strand
Strand 2	D	63	67	parallel
Strand 3	D	3	9	parallel
Strand 4	D	130	138	parallel
Strand 5	D	163	169	parallel
Strand 6	D	198	202	parallel
Strand 7	D	265	271	parallel
Strand 8	D	364	371	anti-parallel
Strand 9	D	310	318	anti-parallel
Strand 10	D	349	354	parallel
Strand 11	D	244	246	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	51	54	first strand
Strand 2	D	58	61	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	2	5	first strand
Strand 2	E	8	11	anti-parallel
Strand 3	E	76	80	anti-parallel
Strand 4	E	151	154	anti-parallel
Strand 5	E	109	112	anti-parallel
Strand 6	E	116	121	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	21	24	first strand
Strand 2	E	52	57	anti-parallel
Strand 3	E	87	92	parallel
Strand 4	E	135	142	anti-parallel
Strand 5	E	127	130	anti-parallel

Back to list of sheets
Back to top of page

There are 7 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	189	198	first strand
Strand 2	E	204	212	anti-parallel
Strand 3	E	285	289	anti-parallel
Strand 4	E	244	249	parallel
Strand 5	E	429	436	parallel
Strand 6	E	512	518	parallel
Strand 7	E	442	446	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	216	220	first strand
Strand 2	E	237	239	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8V4L

Analysis of interatomic Contacts of Structural Units in PDB entry:
8V4L