Analysis of interatomic Contacts of Structural Units in PDB entry:
8V4R

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8V4R entry

There are 3 chains in PDB entry 8V4R (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLN 20	LYS 685
B	GLN 20	VAL 633
C	GLN 20	ILE 50

There are 74 helices in PDB entry 8V4R. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	25	29	Right-handed 310
Helix 2	AA2	A	37	44	Right-handed alpha
Helix 3	AA3	A	52	66	Right-handed alpha
Helix 4	AA4	A	66	79	Right-handed alpha
Helix 5	AA5	A	107	113	Right-handed alpha
Helix 6	AA6	A	113	120	Right-handed alpha
Helix 7	AA7	A	132	136	Right-handed 310
Helix 8	AA8	A	141	158	Right-handed alpha
Helix 9	AA9	A	173	186	Right-handed alpha
Helix 10	AB1	A	198	210	Right-handed alpha
Helix 11	AB2	A	228	238	Right-handed alpha
Helix 12	AB3	A	267	272	Right-handed alpha
Helix 13	AB4	A	308	324	Right-handed alpha
Helix 14	AB5	A	339	346	Right-handed alpha
Helix 15	AB6	A	347	354	Right-handed alpha
Helix 16	AB7	A	370	380	Right-handed alpha
Helix 17	AB8	A	387	398	Right-handed alpha
Helix 18	AB9	A	399	405	Right-handed 310
Helix 19	AC1	A	421	432	Right-handed alpha
Helix 20	AC2	A	445	449	Right-handed 310
Helix 21	AC3	A	512	521	Right-handed alpha
Helix 22	AC4	A	560	571	Right-handed alpha
Helix 23	AC5	A	605	619	Right-handed alpha
Helix 24	AC6	A	622	626	Right-handed 310
Helix 25	AC7	A	645	653	Right-handed alpha
Helix 26	AC8	A	670	683	Right-handed alpha
Helix 27	AC9	B	25	29	Right-handed 310
Helix 28	AD1	B	37	44	Right-handed alpha
Helix 29	AD2	B	52	66	Right-handed alpha
Helix 30	AD3	B	66	79	Right-handed alpha
Helix 31	AD4	B	107	113	Right-handed alpha
Helix 32	AD5	B	113	120	Right-handed alpha
Helix 33	AD6	B	132	136	Right-handed 310
Helix 34	AD7	B	141	158	Right-handed alpha
Helix 35	AD8	B	173	186	Right-handed alpha
Helix 36	AD9	B	198	210	Right-handed alpha
Helix 37	AE1	B	228	238	Right-handed alpha
Helix 38	AE2	B	267	272	Right-handed alpha
Helix 39	AE3	B	308	322	Right-handed alpha
Helix 40	AE4	B	339	346	Right-handed alpha
Helix 41	AE5	B	347	353	Right-handed alpha
Helix 42	AE6	B	370	380	Right-handed alpha
Helix 43	AE7	B	387	398	Right-handed alpha
Helix 44	AE8	B	399	405	Right-handed 310
Helix 45	AE9	B	421	432	Right-handed alpha
Helix 46	AF1	B	445	449	Right-handed 310
Helix 47	AF2	B	512	521	Right-handed alpha
Helix 48	AF3	B	561	571	Right-handed alpha
Helix 49	AF4	B	612	621	Right-handed alpha
Helix 50	AF5	B	622	626	Right-handed 310
Helix 51	AF6	C	25	29	Right-handed 310
Helix 52	AF7	C	37	44	Right-handed alpha
Helix 53	AF8	C	52	66	Right-handed alpha
Helix 54	AF9	C	66	79	Right-handed alpha
Helix 55	AG1	C	107	113	Right-handed alpha
Helix 56	AG2	C	113	120	Right-handed alpha
Helix 57	AG3	C	132	136	Right-handed 310
Helix 58	AG4	C	141	158	Right-handed alpha
Helix 59	AG5	C	173	186	Right-handed alpha
Helix 60	AG6	C	198	210	Right-handed alpha
Helix 61	AG7	C	228	238	Right-handed alpha
Helix 62	AG8	C	267	272	Right-handed alpha
Helix 63	AG9	C	308	324	Right-handed alpha
Helix 64	AH1	C	339	346	Right-handed alpha
Helix 65	AH2	C	347	353	Right-handed alpha
Helix 66	AH3	C	370	380	Right-handed alpha
Helix 67	AH4	C	387	398	Right-handed alpha
Helix 68	AH5	C	399	405	Right-handed 310
Helix 69	AH6	C	421	432	Right-handed alpha
Helix 70	AH7	C	445	449	Right-handed 310
Helix 71	AH8	C	512	521	Right-handed alpha
Helix 72	AH9	C	561	571	Right-handed alpha
Helix 73	AI1	C	616	621	Right-handed alpha
Helix 74	AI2	C	622	626	Right-handed 310

There are 24 sheets in PDB entry 8V4R. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	87	90	first strand
Strand 2	A	99	102	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	105	106	first strand
Strand 2	A	283	284	anti-parallel

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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	137	140	first strand
Strand 2	A	124	129	anti-parallel
Strand 3	A	357	360	parallel
Strand 4	A	331	333	parallel
Strand 5	A	383	386	parallel
Strand 6	A	412	415	parallel
Strand 7	A	438	441	parallel

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There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	264	266	first strand
Strand 2	A	245	249	parallel
Strand 3	A	213	217	parallel
Strand 4	A	165	169	parallel
Strand 5	A	189	192	parallel
Strand 6	A	290	294	parallel
Strand 7	A	302	306	anti-parallel
Strand 8	A	508	509	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	220	222	first strand
Strand 2	A	225	227	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	476	479	first strand
Strand 2	A	492	498	anti-parallel
Strand 3	A	528	536	anti-parallel
Strand 4	A	542	547	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	552	554	first strand
Strand 2	A	557	559	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	574	584	first strand
Strand 2	A	588	597	anti-parallel
Strand 3	A	629	633	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	87	90	first strand
Strand 2	B	99	102	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	105	106	first strand
Strand 2	B	283	284	anti-parallel

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There are 7 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	137	140	first strand
Strand 2	B	124	129	anti-parallel
Strand 3	B	357	360	parallel
Strand 4	B	331	333	parallel
Strand 5	B	383	386	parallel
Strand 6	B	412	416	parallel
Strand 7	B	438	442	parallel

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There are 8 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	264	266	first strand
Strand 2	B	245	249	parallel
Strand 3	B	213	217	parallel
Strand 4	B	165	169	parallel
Strand 5	B	189	192	parallel
Strand 6	B	290	294	parallel
Strand 7	B	302	306	anti-parallel
Strand 8	B	508	509	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	220	222	first strand
Strand 2	B	225	227	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	476	479	first strand
Strand 2	B	492	498	anti-parallel
Strand 3	B	528	536	anti-parallel
Strand 4	B	542	547	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	551	554	first strand
Strand 2	B	557	560	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	592	595	first strand
Strand 2	B	629	632	parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	87	90	first strand
Strand 2	C	99	102	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	105	106	first strand
Strand 2	C	283	284	anti-parallel

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There are 7 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	137	140	first strand
Strand 2	C	124	129	anti-parallel
Strand 3	C	357	360	parallel
Strand 4	C	331	333	parallel
Strand 5	C	383	386	parallel
Strand 6	C	412	415	parallel
Strand 7	C	438	441	parallel

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There are 8 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	264	266	first strand
Strand 2	C	245	249	parallel
Strand 3	C	213	217	parallel
Strand 4	C	165	169	parallel
Strand 5	C	189	192	parallel
Strand 6	C	290	294	parallel
Strand 7	C	302	306	anti-parallel
Strand 8	C	508	509	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	220	222	first strand
Strand 2	C	225	227	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	476	479	first strand
Strand 2	C	492	498	anti-parallel
Strand 3	C	528	536	anti-parallel
Strand 4	C	542	547	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	551	554	first strand
Strand 2	C	557	560	anti-parallel

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There are 3 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	576	584	first strand
Strand 2	C	588	596	anti-parallel
Strand 3	C	629	632	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8V4R

Analysis of interatomic Contacts of Structural Units in PDB entry:
8V4R