Analysis of interatomic Contacts of Structural Units in PDB entry:
8V4S

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8V4S entry

There are 3 chains in PDB entry 8V4S (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 6	TYR 595
B	SER 6	TYR 595
C	SER 6	TYR 595

There are 69 helices in PDB entry 8V4S. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	6	11	Right-handed alpha
Helix 2	AA2	A	23	49	Right-handed alpha
Helix 3	AA3	A	89	94	Right-handed alpha
Helix 4	AA4	A	182	187	Right-handed 310
Helix 5	AA5	A	231	238	Right-handed alpha
Helix 6	AA6	A	241	249	Right-handed alpha
Helix 7	AA7	A	263	267	Right-handed 310
Helix 8	AA8	A	284	288	Right-handed 310
Helix 9	AA9	A	329	342	Right-handed alpha
Helix 10	AB1	A	345	358	Right-handed alpha
Helix 11	AB2	A	360	366	Right-handed alpha
Helix 12	AB3	A	366	371	Right-handed alpha
Helix 13	AB4	A	372	378	Right-handed 310
Helix 14	AB5	A	379	387	Right-handed alpha
Helix 15	AB6	A	435	440	Right-handed alpha
Helix 16	AB7	A	488	493	Right-handed alpha
Helix 17	AB8	A	494	496	Right-handed 310
Helix 18	AB9	A	506	509	Right-handed 310
Helix 19	AC1	A	510	517	Right-handed alpha
Helix 20	AC2	A	519	531	Right-handed alpha
Helix 21	AC3	A	539	558	Right-handed alpha
Helix 22	AC4	A	560	565	Right-handed alpha
Helix 23	AC5	A	570	581	Right-handed alpha
Helix 24	AC6	B	7	11	Right-handed alpha
Helix 25	AC7	B	23	49	Right-handed alpha
Helix 26	AC8	B	89	94	Right-handed alpha
Helix 27	AC9	B	182	187	Right-handed 310
Helix 28	AD1	B	231	238	Right-handed alpha
Helix 29	AD2	B	241	249	Right-handed alpha
Helix 30	AD3	B	263	267	Right-handed 310
Helix 31	AD4	B	284	288	Right-handed 310
Helix 32	AD5	B	329	342	Right-handed alpha
Helix 33	AD6	B	345	358	Right-handed alpha
Helix 34	AD7	B	360	366	Right-handed alpha
Helix 35	AD8	B	366	371	Right-handed alpha
Helix 36	AD9	B	372	378	Right-handed 310
Helix 37	AE1	B	379	387	Right-handed alpha
Helix 38	AE2	B	435	440	Right-handed alpha
Helix 39	AE3	B	488	493	Right-handed alpha
Helix 40	AE4	B	494	496	Right-handed 310
Helix 41	AE5	B	506	509	Right-handed 310
Helix 42	AE6	B	510	517	Right-handed alpha
Helix 43	AE7	B	519	531	Right-handed alpha
Helix 44	AE8	B	539	558	Right-handed alpha
Helix 45	AE9	B	560	565	Right-handed alpha
Helix 46	AF1	B	570	581	Right-handed alpha
Helix 47	AF2	C	7	11	Right-handed alpha
Helix 48	AF3	C	23	49	Right-handed alpha
Helix 49	AF4	C	89	94	Right-handed alpha
Helix 50	AF5	C	182	187	Right-handed 310
Helix 51	AF6	C	231	238	Right-handed alpha
Helix 52	AF7	C	241	249	Right-handed alpha
Helix 53	AF8	C	263	267	Right-handed 310
Helix 54	AF9	C	284	288	Right-handed 310
Helix 55	AG1	C	329	342	Right-handed alpha
Helix 56	AG2	C	345	358	Right-handed alpha
Helix 57	AG3	C	360	366	Right-handed alpha
Helix 58	AG4	C	366	371	Right-handed alpha
Helix 59	AG5	C	372	378	Right-handed 310
Helix 60	AG6	C	379	387	Right-handed alpha
Helix 61	AG7	C	435	440	Right-handed alpha
Helix 62	AG8	C	488	493	Right-handed alpha
Helix 63	AG9	C	494	496	Right-handed 310
Helix 64	AH1	C	506	509	Right-handed 310
Helix 65	AH2	C	510	517	Right-handed alpha
Helix 66	AH3	C	519	531	Right-handed alpha
Helix 67	AH4	C	539	558	Right-handed alpha
Helix 68	AH5	C	560	565	Right-handed alpha
Helix 69	AH6	C	570	581	Right-handed alpha

There are 24 sheets in PDB entry 8V4S. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	13	16	first strand
Strand 2	C	18	22	anti-parallel
Strand 3	B	388	392	parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	13	16	first strand
Strand 2	A	18	22	anti-parallel
Strand 3	C	388	392	parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	52	56	first strand
Strand 2	A	307	328	anti-parallel
Strand 3	A	250	261	parallel
Strand 4	A	271	277	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	101	111	first strand
Strand 2	A	307	328	anti-parallel
Strand 3	A	292	298	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	58	66	first strand
Strand 2	A	189	198	anti-parallel
Strand 3	A	203	206	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	58	66	first strand
Strand 2	A	189	198	anti-parallel
Strand 3	A	228	230	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	69	72	first strand
Strand 2	A	85	88	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	115	120	first strand
Strand 2	A	161	168	anti-parallel
Strand 3	A	146	153	anti-parallel
Strand 4	A	137	141	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	388	392	first strand
Strand 2	B	18	22	parallel
Strand 3	C	13	16	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	398	401	first strand
Strand 2	A	409	413	anti-parallel
Strand 3	A	427	429	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	52	56	first strand
Strand 2	B	307	328	anti-parallel
Strand 3	B	250	261	parallel
Strand 4	B	271	277	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	101	111	first strand
Strand 2	B	307	328	anti-parallel
Strand 3	B	292	298	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	58	66	first strand
Strand 2	B	189	198	anti-parallel
Strand 3	B	203	206	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	58	66	first strand
Strand 2	B	189	198	anti-parallel
Strand 3	B	228	230	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	69	72	first strand
Strand 2	B	85	88	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	115	120	first strand
Strand 2	B	161	168	anti-parallel
Strand 3	B	146	153	anti-parallel
Strand 4	B	137	141	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	398	401	first strand
Strand 2	B	409	413	anti-parallel
Strand 3	B	427	429	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	52	56	first strand
Strand 2	C	307	328	anti-parallel
Strand 3	C	250	261	parallel
Strand 4	C	271	277	anti-parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	101	111	first strand
Strand 2	C	307	328	anti-parallel
Strand 3	C	292	298	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	58	66	first strand
Strand 2	C	189	198	anti-parallel
Strand 3	C	203	206	anti-parallel

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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	58	66	first strand
Strand 2	C	189	198	anti-parallel
Strand 3	C	228	230	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	69	72	first strand
Strand 2	C	85	88	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	115	120	first strand
Strand 2	C	161	168	anti-parallel
Strand 3	C	146	153	anti-parallel
Strand 4	C	137	141	anti-parallel

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There are 3 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	398	401	first strand
Strand 2	C	409	413	anti-parallel
Strand 3	C	427	429	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8V4S

Analysis of interatomic Contacts of Structural Units in PDB entry:
8V4S