Analysis of interatomic Contacts of Structural Units in PDB entry:
8V52

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8V52 entry

There are 6 chains in PDB entry 8V52 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 301	SER 412
B	ALA 301	SER 412
C	ASP 1	GLY 216
D	GLU 1	LYS 216
E	ASP 1	LEU 183
F	GLU 1	VAL 214

There are 20 helices in PDB entry 8V52. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	304	310	Right-handed alpha
Helix 2	AA2	A	356	369	Right-handed alpha
Helix 3	AA3	A	370	373	Right-handed 310
Helix 4	AA4	B	304	310	Right-handed alpha
Helix 5	AA5	B	356	367	Right-handed alpha
Helix 6	AA6	C	83	87	Right-handed 310
Helix 7	AA7	C	125	130	Right-handed alpha
Helix 8	AA8	C	187	192	Right-handed alpha
Helix 9	AA9	D	28	32	Right-handed 310
Helix 10	AB1	D	53	57	Right-handed 310
Helix 11	AB2	D	86	90	Right-handed 310
Helix 12	AB3	D	158	160	Right-handed 310
Helix 13	AB4	D	189	191	Right-handed 310
Helix 14	AB5	D	203	206	Right-handed 310
Helix 15	AB6	E	83	87	Right-handed 310
Helix 16	AB7	E	125	130	Right-handed alpha
Helix 17	AB8	F	28	32	Right-handed 310
Helix 18	AB9	F	53	57	Right-handed 310
Helix 19	AC1	F	64	67	Right-handed 310
Helix 20	AC2	F	159	161	Right-handed 310

There are 28 sheets in PDB entry 8V52. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	302	303	first strand
Strand 2	A	408	412	anti-parallel
Strand 3	A	377	380	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	316	318	first strand
Strand 2	A	343	345	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	321	323	first strand
Strand 2	A	338	340	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	333	335	first strand
Strand 2	A	383	392	anti-parallel
Strand 3	A	395	406	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	302	303	first strand
Strand 2	B	408	412	anti-parallel
Strand 3	B	377	380	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	316	318	first strand
Strand 2	B	343	345	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	321	323	first strand
Strand 2	B	338	340	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	333	335	first strand
Strand 2	B	383	392	anti-parallel
Strand 3	B	395	406	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	4	7	first strand
Strand 2	C	19	25	anti-parallel
Strand 3	C	74	79	anti-parallel
Strand 4	C	66	71	anti-parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	10	14	first strand
Strand 2	C	106	111	parallel
Strand 3	C	88	94	anti-parallel
Strand 4	C	37	42	anti-parallel
Strand 5	C	49	53	anti-parallel
Strand 6	C	57	58	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	30	31	first strand
Strand 2	C	34	35	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	118	122	first strand
Strand 2	C	133	143	anti-parallel
Strand 3	C	177	186	anti-parallel
Strand 4	C	163	167	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	157	158	first strand
Strand 2	C	149	154	anti-parallel
Strand 3	C	195	201	anti-parallel
Strand 4	C	209	214	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	3	7	first strand
Strand 2	D	18	25	anti-parallel
Strand 3	D	80	85	anti-parallel
Strand 4	D	70	75	anti-parallel

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There are 6 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	11	12	first strand
Strand 2	D	109	113	parallel
Strand 3	D	91	98	anti-parallel
Strand 4	D	33	39	anti-parallel
Strand 5	D	46	51	anti-parallel
Strand 6	D	60	62	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	11	12	first strand
Strand 2	D	109	113	parallel
Strand 3	D	91	98	anti-parallel
Strand 4	D	104	105	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	122	126	first strand
Strand 2	D	137	147	anti-parallel
Strand 3	D	178	187	anti-parallel
Strand 4	D	165	167	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	122	126	first strand
Strand 2	D	137	147	anti-parallel
Strand 3	D	178	187	anti-parallel
Strand 4	D	171	172	anti-parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	153	156	first strand
Strand 2	D	196	202	anti-parallel
Strand 3	D	207	213	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	4	7	first strand
Strand 2	E	19	25	anti-parallel
Strand 3	E	74	79	anti-parallel
Strand 4	E	66	71	anti-parallel

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There are 6 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	12	14	first strand
Strand 2	E	106	111	parallel
Strand 3	E	88	94	anti-parallel
Strand 4	E	37	42	anti-parallel
Strand 5	E	49	53	anti-parallel
Strand 6	E	57	58	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	30	31	first strand
Strand 2	E	34	35	anti-parallel

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There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	118	122	first strand
Strand 2	E	136	141	anti-parallel
Strand 3	E	180	183	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	3	7	first strand
Strand 2	F	18	25	anti-parallel
Strand 3	F	80	85	anti-parallel
Strand 4	F	71	75	anti-parallel

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There are 5 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	60	62	first strand
Strand 2	F	45	51	anti-parallel
Strand 3	F	33	39	anti-parallel
Strand 4	F	91	98	anti-parallel
Strand 5	F	105	106	anti-parallel

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There are 5 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	60	62	first strand
Strand 2	F	45	51	anti-parallel
Strand 3	F	33	39	anti-parallel
Strand 4	F	91	98	anti-parallel
Strand 5	F	111	112	anti-parallel

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There are 3 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	143	148	first strand
Strand 2	F	179	185	anti-parallel
Strand 3	F	166	168	anti-parallel

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There are 3 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	154	157	first strand
Strand 2	F	197	203	anti-parallel
Strand 3	F	208	214	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8V52

Analysis of interatomic Contacts of Structural Units in PDB entry:
8V52