Analysis of interatomic Contacts of Structural Units in PDB entry:
8V54


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8V54 entry

There are 5 chains in PDB entry 8V54 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 67LYS 1233
B
 GLY 63LYS 483
C
 GLY 63VAL 485
P
 C 11 C 33
T
 G 3 G 25
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 76 helices in PDB entry 8V54. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
80 88Right-handed alpha
Helix 2
AA2
A
96 111Right-handed alpha
Helix 3
AA3
A
134 159Right-handed alpha
Helix 4
AA4
A
203 206Right-handed 310
Helix 5
AA5
A
225 230Right-handed alpha
Helix 6
AA6
A
240 244Right-handed 310
Helix 7
AA7
A
271 276Right-handed alpha
Helix 8
AA8
A
277 278Right-handed 310
Helix 9
AA9
A
279 283Right-handed 310
Helix 10
AB1
A
294 303Right-handed alpha
Helix 11
AB2
A
305 318Right-handed alpha
Helix 12
AB3
A
344 350Right-handed 310
Helix 13
AB4
A
355 364Right-handed alpha
Helix 14
AB5
A
381 388Right-handed alpha
Helix 15
AB6
A
388 418Right-handed alpha
Helix 16
AB7
A
420 430Right-handed alpha
Helix 17
AB8
A
439 472Right-handed alpha
Helix 18
AB9
A
473 478Right-handed 310
Helix 19
AC1
A
534 554Right-handed alpha
Helix 20
AC2
A
570 577Right-handed alpha
Helix 21
AC3
A
598 604Right-handed alpha
Helix 22
AC4
A
767 769Right-handed 310
Helix 23
AC5
A
770 776Right-handed alpha
Helix 24
AC6
A
786 810Right-handed alpha
Helix 25
AC7
A
817 821Right-handed 310
Helix 26
AC8
A
822 828Right-handed alpha
Helix 27
AC9
A
858 862Right-handed 310
Helix 28
AD1
A
873 878Right-handed alpha
Helix 29
AD2
A
893 908Right-handed alpha
Helix 30
AD3
A
914 922Right-handed alpha
Helix 31
AD4
A
930 940Right-handed alpha
Helix 32
AD5
A
942 956Right-handed alpha
Helix 33
AD6
A
958 970Right-handed alpha
Helix 34
AD7
A
974 990Right-handed alpha
Helix 35
AD8
A
1054 1067Right-handed alpha
Helix 36
AD9
A
1080 1083Right-handed 310
Helix 37
AE1
A
1084 1089Right-handed alpha
Helix 38
AE2
A
1092 1123Right-handed alpha
Helix 39
AE3
A
1145 1169Right-handed alpha
Helix 40
AE4
A
1174 1178Right-handed 310
Helix 41
AE5
A
1205 1210Right-handed alpha
Helix 42
AE6
A
1219 1228Right-handed alpha
Helix 43
AE7
B
64 76Right-handed alpha
Helix 44
AE8
B
87 94Right-handed alpha
Helix 45
AE9
B
100 119Right-handed alpha
Helix 46
AF1
B
149 159Right-handed alpha
Helix 47
AF2
B
163 177Right-handed alpha
Helix 48
AF3
B
185 191Right-handed alpha
Helix 49
AF4
B
192 200Right-handed alpha
Helix 50
AF5
B
244 246Right-handed 310
Helix 51
AF6
B
247 266Right-handed alpha
Helix 52
AF7
B
269 271Right-handed 310
Helix 53
AF8
B
308 315Right-handed alpha
Helix 54
AF9
B
342 354Right-handed alpha
Helix 55
AG1
B
391 409Right-handed alpha
Helix 56
AG2
B
424 435Right-handed alpha
Helix 57
AG3
B
444 451Right-handed alpha
Helix 58
AG4
B
470 482Right-handed alpha
Helix 59
AG5
C
64 76Right-handed alpha
Helix 60
AG6
C
87 94Right-handed alpha
Helix 61
AG7
C
100 119Right-handed alpha
Helix 62
AG8
C
150 159Right-handed alpha
Helix 63
AG9
C
163 177Right-handed alpha
Helix 64
AH1
C
185 192Right-handed alpha
Helix 65
AH2
C
192 200Right-handed alpha
Helix 66
AH3
C
244 246Right-handed 310
Helix 67
AH4
C
247 266Right-handed alpha
Helix 68
AH5
C
269 271Right-handed 310
Helix 69
AH6
C
308 315Right-handed alpha
Helix 70
AH7
C
318 323Right-handed 310
Helix 71
AH8
C
342 354Right-handed alpha
Helix 72
AH9
C
391 409Right-handed alpha
Helix 73
AI1
C
415 419Right-handed 310
Helix 74
AI2
C
424 435Right-handed alpha
Helix 75
AI3
C
444 451Right-handed alpha
Helix 76
AI4
C
470 484Right-handed alpha
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There are 13 sheets in PDB entry 8V54. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
184 185first strand
Strand 2
A
174 178anti-parallel
Strand 3
A
221 224anti-parallel
Strand 4
A
209 215anti-parallel
Strand 5
A
194 201anti-parallel
Strand 6
A
265 268parallel
Strand 7
A
290 293parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
435 437first strand
Strand 2
A
838 840anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
747 749first strand
Strand 2
A
619 625anti-parallel
Strand 3
A
610 615anti-parallel
Strand 4
A
606 607anti-parallel
Strand 5
A
779 780anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1127 1131first strand
Strand 2
A
1137 1142anti-parallel
Strand 3
A
884 889anti-parallel
Strand 4
A
1183 1186anti-parallel
Strand 5
A
1216 1218anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
992 994first strand
Strand 2
A
1048 1050anti-parallel
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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
125 127first strand
Strand 2
B
206 218parallel
Strand 3
B
230 243anti-parallel
Strand 4
B
334 341anti-parallel
Strand 5
B
296 307anti-parallel
Strand 6
B
285 293anti-parallel
Strand 7
B
273 279anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
133 134first strand
Strand 2
B
180 181anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
145 148first strand
Strand 2
C
146 149anti-parallel
Strand 3
C
179 181anti-parallel
Strand 4
C
133 134anti-parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
324 326first strand
Strand 2
B
329 331anti-parallel
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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
413 414first strand
Strand 2
B
383 387parallel
Strand 3
B
439 443parallel
Strand 4
B
452 457anti-parallel
Strand 5
B
463 467anti-parallel
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There are 7 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
125 127first strand
Strand 2
C
206 218parallel
Strand 3
C
230 243anti-parallel
Strand 4
C
334 341anti-parallel
Strand 5
C
296 307anti-parallel
Strand 6
C
285 293anti-parallel
Strand 7
C
273 279anti-parallel
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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
324 326first strand
Strand 2
C
329 331anti-parallel
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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
413 414first strand
Strand 2
C
381 387parallel
Strand 3
C
437 443parallel
Strand 4
C
452 457anti-parallel
Strand 5
C
463 467anti-parallel
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