Analysis of interatomic Contacts of Structural Units in PDB entry:
8V55


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8V55 entry

There are 5 chains in PDB entry 8V55 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 67ARG 1234
B
 GLY 63LYS 483
C
 PRO 60VAL 485
P
 C 11 C 33
T
 G 3 G 25
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 66 helices in PDB entry 8V55. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
80 89Right-handed alpha
Helix 2
AA2
A
96 110Right-handed alpha
Helix 3
AA3
A
134 159Right-handed alpha
Helix 4
AA4
A
203 206Right-handed 310
Helix 5
AA5
A
225 230Right-handed alpha
Helix 6
AA6
A
240 244Right-handed 310
Helix 7
AA7
A
270 278Right-handed alpha
Helix 8
AA8
A
279 282Right-handed 310
Helix 9
AA9
A
294 302Right-handed alpha
Helix 10
AB1
A
305 318Right-handed alpha
Helix 11
AB2
A
373 379Right-handed alpha
Helix 12
AB3
A
382 388Right-handed alpha
Helix 13
AB4
A
388 418Right-handed alpha
Helix 14
AB5
A
420 431Right-handed alpha
Helix 15
AB6
A
439 473Right-handed alpha
Helix 16
AB7
A
474 481Right-handed 310
Helix 17
AB8
A
535 554Right-handed alpha
Helix 18
AB9
A
570 576Right-handed alpha
Helix 19
AC1
A
598 604Right-handed alpha
Helix 20
AC2
A
756 760Right-handed 310
Helix 21
AC3
A
770 776Right-handed alpha
Helix 22
AC4
A
787 810Right-handed alpha
Helix 23
AC5
A
822 828Right-handed alpha
Helix 24
AC6
A
874 878Right-handed 310
Helix 25
AC7
A
893 908Right-handed alpha
Helix 26
AC8
A
914 922Right-handed alpha
Helix 27
AC9
A
930 939Right-handed alpha
Helix 28
AD1
A
942 956Right-handed alpha
Helix 29
AD2
A
958 969Right-handed alpha
Helix 30
AD3
A
974 989Right-handed alpha
Helix 31
AD4
A
1054 1067Right-handed alpha
Helix 32
AD5
A
1080 1083Right-handed 310
Helix 33
AD6
A
1084 1089Right-handed alpha
Helix 34
AD7
A
1092 1124Right-handed alpha
Helix 35
AD8
A
1145 1167Right-handed alpha
Helix 36
AD9
A
1219 1228Right-handed alpha
Helix 37
AE1
B
64 76Right-handed alpha
Helix 38
AE2
B
87 93Right-handed alpha
Helix 39
AE3
B
100 119Right-handed alpha
Helix 40
AE4
B
150 159Right-handed alpha
Helix 41
AE5
B
163 177Right-handed alpha
Helix 42
AE6
B
185 200Right-handed alpha
Helix 43
AE7
B
247 266Right-handed alpha
Helix 44
AE8
B
308 315Right-handed alpha
Helix 45
AE9
B
342 354Right-handed alpha
Helix 46
AF1
B
391 409Right-handed alpha
Helix 47
AF2
B
417 419Right-handed 310
Helix 48
AF3
B
424 435Right-handed alpha
Helix 49
AF4
B
444 450Right-handed alpha
Helix 50
AF5
B
467 481Right-handed alpha
Helix 51
AF6
C
61 76Right-handed alpha
Helix 52
AF7
C
87 94Right-handed alpha
Helix 53
AF8
C
100 119Right-handed alpha
Helix 54
AF9
C
150 158Right-handed alpha
Helix 55
AG1
C
163 176Right-handed alpha
Helix 56
AG2
C
185 192Right-handed alpha
Helix 57
AG3
C
192 201Right-handed alpha
Helix 58
AG4
C
247 265Right-handed alpha
Helix 59
AG5
C
269 273Right-handed 310
Helix 60
AG6
C
308 315Right-handed alpha
Helix 61
AG7
C
319 323Right-handed 310
Helix 62
AG8
C
342 353Right-handed alpha
Helix 63
AG9
C
391 410Right-handed alpha
Helix 64
AH1
C
424 435Right-handed alpha
Helix 65
AH2
C
444 451Right-handed alpha
Helix 66
AH3
C
470 485Right-handed alpha
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There are 15 sheets in PDB entry 8V55. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
184 186first strand
Strand 2
A
174 178anti-parallel
Strand 3
A
220 224anti-parallel
Strand 4
A
208 215anti-parallel
Strand 5
A
194 202anti-parallel
Strand 6
A
265 268parallel
Strand 7
A
290 293parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
435 438first strand
Strand 2
A
837 840anti-parallel
Strand 3
A
814 816anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
612 615first strand
Strand 2
A
619 624anti-parallel
Strand 3
A
748 751anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1128 1131first strand
Strand 2
A
1136 1142anti-parallel
Strand 3
A
884 890anti-parallel
Strand 4
A
1183 1186anti-parallel
Strand 5
A
1216 1218anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
133 134first strand
Strand 2
B
180 181anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
145 149first strand
Strand 2
C
145 149anti-parallel
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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
206 217first strand
Strand 2
B
231 242anti-parallel
Strand 3
B
338 341anti-parallel
Strand 4
B
298 303anti-parallel
Strand 5
B
285 291anti-parallel
Strand 6
B
273 279anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
324 326first strand
Strand 2
B
329 331anti-parallel
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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
413 415first strand
Strand 2
B
381 385parallel
Strand 3
B
437 442parallel
Strand 4
B
453 457anti-parallel
Strand 5
B
465 466anti-parallel
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There are 7 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
125 127first strand
Strand 2
C
206 217parallel
Strand 3
C
231 243anti-parallel
Strand 4
C
334 341anti-parallel
Strand 5
C
296 307anti-parallel
Strand 6
C
285 293anti-parallel
Strand 7
C
274 279anti-parallel
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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
133 134first strand
Strand 2
C
180 181anti-parallel
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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
324 326first strand
Strand 2
C
329 331anti-parallel
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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
354 357first strand
Strand 2
C
369 372anti-parallel
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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
383 384first strand
Strand 2
C
413 414parallel
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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
386 387first strand
Strand 2
C
440 443parallel
Strand 3
C
452 456anti-parallel
Strand 4
C
463 467anti-parallel
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